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Population biology of the freshwater shrimp Atya scabra (Leach, 1816) (Crustacea: Decapoda) in São Francisco River, Brazil: evidence from a population at risk of extinction

Abstract

Considering the environmental impacts to rivers caused by the exploitation of water resources and the consequences of these impacts upon fauna, the objective of this study was to evaluate the population biology of the shrimp Atya scabra (Leach, 1816) in the final stretch of the major river of South America. This species was assessed as “Near Threatened” in the red book of Brazilian crustaceans. Specimens were sampled monthly from February 2015 to January 2016 in a region of the lower São Francisco River, Brazil. A total of 233 individuals of A. scabra were collected, including 120 males and 113 females (71 non-ovigerous and 42 ovigerous). Atya scabra abundance was higher when water flow values increased. A decrease in abundance was observed over the one year of sampling, indicating a decline of about 90 % in this population in this region of the São Francisco River. We suggest that this decline was caused by the reduction of water flow in the São Francisco River, due to a policy that authorized retaining more water behind dams and releasing less water into the river in April and June 2015. In light of this, other studies should monitor the population dynamics of this species, while legislative actions are also needed to protect this fragile ecosystem.

Keywords
Atyidae; conservation; Neotropical region; preservation; South America

INTRODUCTION

Habitat loss has negative impacts on species richness, population abundance, and genetic diversity (Laurence et al., 2002Laurence, W.F.; Lovejoy, T.E.; Vasconcelos, H.L.; Bruna, E.M.; Didham, R.K.; Stouffer, P.G.; Gascon, C.; Bierregaard, R.O.; Laurence, S.G. and Sampaio, E. 2002. Ecosystem decay of amazonian forest fragments: a 22-year investigation. Conservation Biology, 16: 605-618.; Aguilar et al., 2008Aguilar, R.; Quesada, M.; Ashworth, L.; Herrerias-Diego, Y. and Lobo, J. 2008. Genetic consequences of habitat fragmentation in plant populations: Susceptible signals in plant traits and methodological approaches. Molecular Ecology, 17: 5177-5188.) and rivers are some of the ecosystems most negatively impacted worldwide (Strayer and Dudgeon, 2010Strayer, D.L. and Dudgeon, D. 2010. Freshwater biodiversity conservation: recent progress and future challenges. Journal of the North American Benthological Society, 29: 344-358.; Vörösmarty et al., 2010Vörösmarty, J.C.; McIntyre, P.B.; Gessner, M.O.; Dudgeon, D.; Prusevich, A.; Green, P.; Glidden, S.; Bunn, S.E.; Sullivan, C.A.; Liermann, C.R. and Davies, P.M. 2010. Global threats to human water security and river biodiversity. Nature, 467: 555-561.). Human actions, such as the construction of dams for energy generation and the deviation of water to supply irrigation systems for extensive agriculture, result in habitat loss for many species living in these rivers (De Grave et al., 2015De Grave, S.; Smith, K.G.; Adeler, N.A.; Allen, D.J.; Alvarez, F.; Anker, A.; Cai, Y.; Carrizo, S.F.; Klotz, W.; Mantelatto, F.L.; Page, T.J.; Shy, J.Y.; Villalobos, J.L. and Wowor, D. 2015. Dead shrimp blues: A global assessment of extinction risk in freshwater shrimps (Crustacea: Decapoda: Caridea). PLoS ONE, 10: 1-14.). Thus, natural characteristics, such as flow volume and velocity can directly or indirectly have an impact on the fauna that inhabit these rivers, some of which can be under the threat of extinction (De Grave et al., 2015De Grave, S.; Smith, K.G.; Adeler, N.A.; Allen, D.J.; Alvarez, F.; Anker, A.; Cai, Y.; Carrizo, S.F.; Klotz, W.; Mantelatto, F.L.; Page, T.J.; Shy, J.Y.; Villalobos, J.L. and Wowor, D. 2015. Dead shrimp blues: A global assessment of extinction risk in freshwater shrimps (Crustacea: Decapoda: Caridea). PLoS ONE, 10: 1-14.). Estimates suggest that at least 10,000-20,000 freshwater species are at risk of extinction (Strayer and Dudgeon, 2010Strayer, D.L. and Dudgeon, D. 2010. Freshwater biodiversity conservation: recent progress and future challenges. Journal of the North American Benthological Society, 29: 344-358.).

The carideans shrimps are one of the most common and important invertebrates in terms of abundance and biomass inhabiting rivers and approximately 800 species live in freshwater environments, representing about a fifth of global shrimp diversity (Magalhães et al., 2016Magalhães, C.; Campos, M.R.; Collins, P.A. and Mantelatto, F.L. 2016. Diversity, Distribution and Conservation of Freshwater Crabs and Shrimps in South America. p. 303-322. In: T. Kawai and N. Cumberlidge (eds), A Global Overview of the Conservation of Freshwater Decapod Crustaceans. Cham, Springer International Publishing.). The families Atyidae and Palaemonidae comprise about 98 % of all freshwater shrimp species worldwide (De Grave et al., 2015De Grave, S.; Smith, K.G.; Adeler, N.A.; Allen, D.J.; Alvarez, F.; Anker, A.; Cai, Y.; Carrizo, S.F.; Klotz, W.; Mantelatto, F.L.; Page, T.J.; Shy, J.Y.; Villalobos, J.L. and Wowor, D. 2015. Dead shrimp blues: A global assessment of extinction risk in freshwater shrimps (Crustacea: Decapoda: Caridea). PLoS ONE, 10: 1-14.). Family Atyidae De Haan, 1849 comprises 44 genera, which include some 460 species of freshwater and estuarine shrimp (De Grave and Fransen, 2011De Grave, S. and Fransen, C.H.J.M. 2011. Carideorum catalogus: the recent species of the Dendrobranchiate, Stenopodidean, Procaridideanand Caridean shrimps (Crustacea: Decapoda). Zoologische Mededelingen, 85: 195-589.; Christodoulou et al., 2016Christodoulou, M.; Anastasiadou, C.; Jugovic, J. and Tzomos, T. 2016. Freshwater Shrimps (Atyidae, Palaemonidae, Typhlocarididae) in the Broader Mediterranean Region: Distribution, Life Strategies, Threats, Conservation Challenges and Taxonomic Issues. p. 199-236. In: T. Kawai and N. Cumberlidge (eds), A Global Overview of the Conservation of Freshwater Decapod Crustaceans. Berlin, Springer. ; Jugovic et al., 2019Jugovic, J.; Zakšek, V.; Petković, M. and Sket, B. 2019. A shrimp out of place. New genus of Atyidae (Crustacea: Decapoda) in subterranean waters of southeastern Europe, with some remarks on Atyidae taxonomy. Zoologischer Anzeiger, 283: 111-123.). Only four species belonging to two genera are reported for Brazil (Melo, 2003Melo, G.A.S. 2003. Manual de Identificação dos Crustacea Decapoda de água doce do Brasil. São Paulo, Editora Loyola, 432p.; Torati and Mantelatto, 2012Torati, L.S. and Mantelatto, F.L. 2012. Ontogenetic and evolutionary change of external morphology of the neotropical shrimp Potimirim (Holthuis, 1954) explained by a molecular phylogeny of the genus. Journal of Crustacean Biology, 32: 625-640. ): genus Atya Leach, 1816, which includes Atya gabonensis Giebel, 1875 and Atya scabra (Leach, 1816) (Fig. 1), and Potimirim Holthuis, 1954, which includes Potimirim brasiliana Villalobos, 1959 and Potimirim potimirim (Müller, 1881).

Figure 1.
(A) Dorsal and (B) lateral view of Atya scabra (Leach, 1816) captured on the São Francisco River, Sergipe, Brazil (Photo: Alves, DFR).

Atyids are characterized by a peculiarity of the external morphology of the first two pairs of pereiopods, which have brush-shaped ends with many setal tufts (Hobbs and Hart, 1982Hobbs Jr, H.H. and Hart, C. 1982. The shrimp genus Atya (Decapoda: Atyidae). Smithsonian Contributions to Zoology, 364: 1-143. ; Bauer, 2004Bauer, R.T. 2004. Remarkable shrimps. Adaptations and Natural History of the Carideans. Norman, University of Oklahoma Press, 316p.). These shrimps are specialized for filter feeding, using their brushes to obtain organic matter from suspended particles or to sweep microbial biofilms (Chace, 1972Chace, F. 1972. The shrimps of the Smithsonian-Bredin Caribbean Expeditions with a Summary of the West Indian Shallow-water Species (Crustacea: Decapoda: Natantia). Smithsonian Contributions to Zoology, 98: 1-179.; Souza and Moulton, 2005Souza, M.L. and Moulton, T.P. 2005. The effects of shrimps on benthic material in a Brazilian island stream. Freshwater Biology, 50: 592-602.). Because of their special morphology, shrimps of the genus Atya are widely exploited in the ornamental freshwater aquarium trade (De Grave et al., 2008De Grave, S.; Cai, Y. and Anker, A. 2008. Global diversity of shrimps (Crustacea: Decapoda: Caridea) in freshwater. Hydrobiologia, 595: 287-293.; Mrugala et al., 2019Mrugala, A.; Buřič, M.; Petrusek, A. and Kouba, A. 2019. May atyid shrimps act as potential vectors of crayfish plague? NeoBiota, 51: 65-80.). Shrimp of the species A. scabra are generally found in rocky river beds, clean streams, and in places with fast water currents and high dissolved oxygen levels (Rocha and Bueno, 2004Rocha, S.S. and Bueno, S.L.S. 2004. Crustáceos decápodes de água doce com ocorrência no Vale do Ribeira de Iguapé e rios costeiros adjacentes, São Paulo, Brasil. Revista Brasileira de Zoologia, 21: 1001-1010.; Melo and Coelho, 2008Melo, G.A.S. and Coelho, P.A. 2008. Atya scabra (Leach, 1815). p. 272-273. In: A.B.M. Machado; G.M. Drummond and A.P. Paglia (eds), Livro Vermelho da Fauna Brasileira Ameaçada de Extinção. Brasília, Ministério do Meio Ambiente.). Atya scabra are also one of the resources exploited by artisanal fishermen (Buckup and Bond-Buckup, 1999Buckup, L. and Bond-Buckup, G. 1999. Os crustáceos do Rio Grande do Sul. Porto Alegre, Editora da Universidade, 503p.; Almeida et al., 2010Almeida, A.O.; Mossolin, E.C. and Luz, J.R. 2010. Reproductive biology of the freshwater shrimp Atya scabra (Leach, 1815) (Crustacea: Atyidae) in Ilhéus, Bahia, Brazil. Zoological Studies, 49: 243-252.).

Atya scabra has a wide amphi-Atlantic distribution, on the west coast of Africa, from Liberia to northern Angola (Hobbs and Hart, 1982Hobbs Jr, H.H. and Hart, C. 1982. The shrimp genus Atya (Decapoda: Atyidae). Smithsonian Contributions to Zoology, 364: 1-143. ; De Grave et al., 2013De Grave, S.; Villalobos, J.L.; Mantelatto, F.L. and Alvarez, F. 2013. Atya scabra. The IUCN Red List of Threatened Species, e.T197895A2504208.), on the other side of the Atlantic ocean, on the east coast of the American continent, from Mexico to Brazil (Ceará, Rio Grande do Norte, Pernambuco, Sergipe, Bahia, Rio de Janeiro, São Paulo, Santa Catarina and Rio Grande do Sul), as well as across island countries in Central America, such as Dominica, Jamaica, Cuba, and Curaçao (Hobbs and Hart, 1982Hobbs Jr, H.H. and Hart, C. 1982. The shrimp genus Atya (Decapoda: Atyidae). Smithsonian Contributions to Zoology, 364: 1-143. ; Melo, 2003Melo, G.A.S. 2003. Manual de Identificação dos Crustacea Decapoda de água doce do Brasil. São Paulo, Editora Loyola, 432p.; Boos et al., 2012Boos, H.; Buckup, G.B.; Buckup, L.; Araujo, P.B.; Magalhães, C.; Almerão, M.P.; dos Santos, R.A. and Mantelatto, F.L. 2012. Checklist of the crustacea from the state of Santa Catarina, Brazil. Check List, 8: 1020-1046.; Pileggi et al., 2013Pileggi, L.G.; Magalhães, C.; Bond-Buckup, G. and Mantelatto, F.L. 2013. New records and extension of the known distribution of some freshwater shrimps in Brazil. Revista Mexicana de Biodiversidad, 84: 563-574.; Oliveira et al., 2019Oliveira, M.C.A.; Terossi, M. and Mantelatto, F.L. 2019. Phylogeographic structuring of the amphidromous shrimp Atya scabra (Crustacea, Decapoda, Atyidae) unveiled by range-wide mitochondrial DNA sampling. Marine and Freshwater Research, 70: 1078-1093.).

Considering its remarkably large geographic distribution, A. scabra is considered as “Least Concern” by the International Union for Conservation of Nature (IUCN) (De Grave et al., 2013De Grave, S.; Villalobos, J.L.; Mantelatto, F.L. and Alvarez, F. 2013. Atya scabra. The IUCN Red List of Threatened Species, e.T197895A2504208.). However, in 2008, A. scabra was listed as “Vulnerable” in the red book of Brazilian fauna threatened with extinction, i.e., the species had a moderate risk of extinction in the wild, since its populations were decreasing in size throughout its geographic extent (Machado et al., 2008Machado, A.B.M.; Drummond, G.M. and Paglia, A.P. 2008. Livro Vermelho da fauna brasileira ameaçada de extinção. Belo Horizonte, Fundação Biodiversitas, 37p.). Melo and Coelho (2008Melo, G.A.S. and Coelho, P.A. 2008. Atya scabra (Leach, 1815). p. 272-273. In: A.B.M. Machado; G.M. Drummond and A.P. Paglia (eds), Livro Vermelho da Fauna Brasileira Ameaçada de Extinção. Brasília, Ministério do Meio Ambiente.) affirm that since 2002, populations of this species have been declining in some watersheds, and they have totally disappeared from others. More recently, in 2016, this species was assessed as “Near Threatened” in the red book of Brazilian crustaceans (Mantelatto et al., 2016Mantelatto, F.L.M.; Torati, L.S.; Pileggi, L.G.; Mossolin, E.C.; Terossi, M.; Carvalho, F.; Rocha, S.S. and Magalhães, C. 2016. Avaliação dos Camarões Atiídeos (Decapoda: Atyidae). p. 92-102. In: M. Pinheiro and H. Boos (eds), Livro Vermelho dos Crustáceos do Brasil: Avaliação 2010-2014. Porto Alegre, Sociedade Brasileira de Carcinologia.).

In this scenario, continuous anthropogenic impacts to the São Francisco River (e.g., transporting its waters to other hydrographic basins, using the water to produce energy, urban and industrial supply, navigation, and fisheries for 20 million people) have environmental consequences, such as potential negative impacts on the fauna that inhabit this river (Sato and Godinho, 2004Sato, Y. and Godinho, H. 2004. Migratory fishes of the São Francisco river. p. 195-232. In: J. Carolsfeld; B. Harvey; C. Ross and A. Baer (eds), Migratory fishes of South America: biology, fisheries, and conservation status. Washington, World Fisheries Trust/Word Bank/International Development.; Silveira et al., 2016Silveira, C.S.; Souza-Filho, F.A.; Martins, E.S.P.R.; Oliveira, J.L.; Costa, A.C.; Nobrega, M.T.; Souza, S.A. and Silva, R.F.V. 2016. Mudanças climáticas na bacia do rio São Francisco: Uma análise para precipitação e temperatura. Revista Brasileira de Recursos Hídricos, 21: 416-428. ; Brito and Magalhães, 2017Brito, M.F.G. and Magalhães, A.L.B. 2017. Brazil’s development turns river into sea. Science, 358: 179-180. ). Therefore, the main purpose of this investigation was to describe the population biology of the freshwater shrimp A. scabra in the lower São Francisco River, northeastern Brazil.

MATERIAL AND METHODS

Study sites and sampling methods

Specimens of A. scabra were collected monthly from February 2015 to January 2016 in the lower São Francisco River, about 200 km from the mouth, in northeastern Brazil, Xingó Reservoir (09°39'27"S 37°40'44"W) (Fig. 2). The São Francisco River is one of the largest rivers in eastern South America (about 2900 km in length) and crosses five Brazilian states (Bahia, Minas Gerais, Alagoas, and Sergipe Pernambuco) (Welcomme, 1985Welcomme, R.L. 1985. River fisheries. Rome, FAO Fisheries Technical Papers, 330p.). The headwaters are located in the state of Minas Gerais and the river ends in the Atlantic Ocean between Sergipe and Alagoas states (Santos et al., 2012Santos, H.A.; Pompeu, P.S. and Kenji, D.O.L. 2012. Changes in the flood regime of São Francisco River (Brazil) from 1940 to 2006. Regional Environmental Change, 12: 123-132. ) (Fig. 2).

Figure 2.
Map of Brazil indicating the São Francisco River watershed. Inset: sampling site (black circle) and the region of the Xingó Reservoirs (white circle). Legend: MG-Minas Gerais; BA-Bahia; SE-Sergipe; AL-Alagoas; PE-Pernambuco.

Four sampling sites (S) were selected, two on each riverbank, with a distance of about 500 m between them (S1, S2, S3, and S4). These sites were selected because they had stony stream beds with transparent waters, strong currents, and an absence of accumulated fine sediments, i.e., ideal for the establishment of this filtering species (Almeida et al., 2008Almeida, A.O.; Coelho, P.A.; Luz, J.R.; Santos, J.T.A. and Ferraz, N.R. 2008. Decapod crustaceans in fresh waters of southeastern Bahia, Brazil. Revista de Biología Tropical, 56: 1225-1254.; 2010Almeida, A.O.; Mossolin, E.C. and Luz, J.R. 2010. Reproductive biology of the freshwater shrimp Atya scabra (Leach, 1815) (Crustacea: Atyidae) in Ilhéus, Bahia, Brazil. Zoological Studies, 49: 243-252.). Each sampling site was considered a replicate, and they exhibited characteristics similar to each other.

Shrimps were collected at a mean depth of one meter, since this species frequents shallow waters (there are no records of A. scabra living in depths greater than 1 meter), where there is swiftly flowing water over a rocky substrate (Hobbs and Hart, 1982Hobbs Jr, H.H. and Hart, C. 1982. The shrimp genus Atya (Decapoda: Atyidae). Smithsonian Contributions to Zoology, 364: 1-143. ). The specimens were collected manually during snorkeling sessions. This sampling method was selected after a previous study, which showed low capture success using traps and hand nets, as performed by other authors (e.g., Galvão and Bueno, 2000Galvão, R. and Bueno, S.L.S. 2000. Population structure and reproductive biology of the Camacuto shrimp, Atya scabra (Leach, 1815) (Decapoda, Caridea, Atyidae), from São Sebastião, Brazil. p. 291-299. In: J.C. von Vaupel Klein and F.R. Schram (eds), The Biodiversity Crisis and Crustacea. Proceedings of the Fourth International Crustacean Congress. Amsterdam, Netherlands, 20-24 July 1998, vol. 2. Rotterdam/Brookfield, A.A Balkema. (Crustacean Issues, 12) ; Almeida et al., 2010Almeida, A.O.; Mossolin, E.C. and Luz, J.R. 2010. Reproductive biology of the freshwater shrimp Atya scabra (Leach, 1815) (Crustacea: Atyidae) in Ilhéus, Bahia, Brazil. Zoological Studies, 49: 243-252.; Herrera-Correa et al., 2013Herrera-Correal, J.; Mossolin, E.C.; Wehrtmann, I.S. and Mantelatto, F.L. 2013. Reproductive aspects of the caridean shrimp Atya scabra (Leach, 1815) (Decapoda: Atyidae) in São Sebastião Island, southwestern Atlantic, Brazil. Latin American Journal of Aquatic Research, 41: 676-684. ), but demonstrated the effectiveness of manual collection during snorkeling. During each month, a 20-m-wide transect was outlined parallel to the riverside in each sampling site. Two divers collected samples of A. scabra along this transect, with a standard catch effort of 30 min, totaling 1 h per site per month. After capture, specimens were placed in plastic bags and brought to the surface.

The sampling was carried out using a mark-and-recapture method, which consisted of the capture, marking and the attempted recapture of marked individuals in subsequent samplings (one month later). The individuals were marked with visible implant elastomer (VIE). VIE is a colored polymer supplied in liquid form that cures to a flexible solid with the addition of a curing agent (Northwest Marine Technology (NMT), Shaw Island, WA, USA). Once the polymer and curing agent are mixed, it can then be injected subcutaneously using a small-bore needle in a variety of body locations where there are clear or lightly pigmented tissues, so that it forms a permanent, visible, non-toxic mark (Woods and James, 2003Woods, C.M.C. and James, P.J. 2003. Evalution of visible implant elastomer (VIE) as a tagging technique for spiny lobsters (Jasus edwardsii). Marine and Freshwater Research, 54: 853-858.). This type of tag has been previously used in decapod crustaceans and has shown good efficiency (e.g., Davis et al., 2004Davis, J.L.D.; Young-Williams, A.C.; Hines, A.H. and Zmora, O. 2004. Comparing two types of internal tags in juvenile blue crabs. Fisheries Research, 67: 265-274.; Clark and Kershner, 2006Clark, J.M. and Kershner, M.W. 2006. Size-dependent effects of visible implant elastomer marking on crayfish (Orconectes obscurus) growth, mortality, and tag retention. Crustaceana, 79: 275-284.). The specimens were marked according to the sampling site: S1, in the left side of abdomen; S2, in the right side of abdomen; S3, in the left side of telson; and S4, in the right side of telson. In addition, different colors were used to mark the sampling months. After the specimens were measured, sexed and marked, the individuals were returned to the river, in the same site from where they were captured.

In each sampling site, temperature (°C), rainfall (mm), and water flow (m3/s) were recorded monthly. Temperature was measured with a thermometer. Rainfall data during the sample period were provided by the Instituto Nacional de Pesquisas Espaciais (INPE) through their official website (http://sinda.crn2.inpe.br/PCD/SITE/novo/site/index.php). Flow data during the sample period were provided from the Agência Nacional de Águas (ANA) of the Ministério do Meio Ambiente. Water flow of the studied region is controlled by the Xingó Reservoir, and varied between 261 and 2323 m3/s during the period of study.

Population biology of the Atya scabra

In the field, the individuals were identified according to (Melo (2003Melo, G.A.S. 2003. Manual de Identificação dos Crustacea Decapoda de água doce do Brasil. São Paulo, Editora Loyola, 432p.). This species is characterized by the presence of chelipeds on the first two pairs of pereiopods with tufts of dense setae on the propodus and dactylus (Fryer, 1977Fryer, G. 1977. Studies on the functional morphology and ecology of the atyid prawns of Dominica. Philosophical Transactions of the Royal Society B: Biological Sciences, 277: 57-129.). This species also has a robust third pereiopod, with the propodus elongated and flat, and a somewhat sculptured carapace (Melo, 2003Melo, G.A.S. 2003. Manual de Identificação dos Crustacea Decapoda de água doce do Brasil. São Paulo, Editora Loyola, 432p.).

Specimens were measured for carapace length (CL), i.e., the distance between the postero-orbital margin and the posterior margin of the carapace, with Vernier calipers to the nearest 0.01 mm. The specimens were separated into the following demographic categories: males, non-ovigerous females, ovigerous females, and juveniles. Specimens were sexed based on the presence or absence of the male appendix masculina, located on the second pair of pleopods (Galvão and Bueno, 2000Galvão, R. and Bueno, S.L.S. 2000. Population structure and reproductive biology of the Camacuto shrimp, Atya scabra (Leach, 1815) (Decapoda, Caridea, Atyidae), from São Sebastião, Brazil. p. 291-299. In: J.C. von Vaupel Klein and F.R. Schram (eds), The Biodiversity Crisis and Crustacea. Proceedings of the Fourth International Crustacean Congress. Amsterdam, Netherlands, 20-24 July 1998, vol. 2. Rotterdam/Brookfield, A.A Balkema. (Crustacean Issues, 12) ). Adult male individuals were classified by the presence of a completely developed appendix masculina on the second pleopods, as in Almeida et al. (2010Almeida, A.O.; Mossolin, E.C. and Luz, J.R. 2010. Reproductive biology of the freshwater shrimp Atya scabra (Leach, 1815) (Crustacea: Atyidae) in Ilhéus, Bahia, Brazil. Zoological Studies, 49: 243-252.). Adult female individuals were classified according to the size of the smallest ovigerous females obtained throughout the sampling period (Bauer, 1989Bauer, R. 1989. Continuous reproduction and episodic recruitment in nine shrimp species inhabiting a tropical seagrass meadow. Journal of Experimental Marine Biology and Ecology, 127: 175-187.). Juvenile individuals were classified by absence of the appendix masculina and smaller than smallest ovigerous individuals (Mattos and Oshiro, 2009Mattos, L.A. and Oshiro, L.M.Y. 2009. Estrutura populacional de Macrobrachium potiuna (Crustacea, Palaemonidae) no Rio do Moinho, Mangaratiba, Rio de Janeiro, Brasil. Biota Neotrópica, 9: 81-86.). To evaluate the population biology of A. scabra, size-frequency distributions were constructed using 2.0 mm CL intervals for both males and females. The individuals were distributed into 11 size classes, from 6.3 to 28.3 mm CL.

Moreover, other population parameters were calculated, such as the proportion of ovigerous females and the sex ratio. The proportion of ovigerous females was estimated monthly as the number of females carrying eggs on the abdomen relative to the total number of adult females. Sex ratio was estimated monthly as the quotient between the number of males and the number of males plus females in the population. Thus, sex ratio values higher or lower than 0.5 indicated populations skewed toward males or females, respectively. For each month, we tested deviations from a 1:1 sex ratio using a binomial test (Wilson and Hardy, 2002Wilson, K. and Hardy, I.C.W. 2002. Statistical analysis of sex ratios: an introduction. p. 48-92. In: I.C.W. Hardy (ed), Sex ratios: concepts and research methods. Cambridge, Cambridge University Press.). In these monthly analyses (proportion of ovigerous females and sex ratio) all individual samples were considered, including those that were recaptured.

Analysis of results

The model’s assumptions of homoscedasticity (Levene’s test) and normality (Shapiro-Wilk’s test) of the population size distribution were tested first (Zar, 2010Zar, J.H. 2010. Biostatistical Analysis. Upper Saddle River, Prentice-Hall, 944p.). The mean size (CL) was compared between males and females by the non-parametric Mann-Whitney test (( < 0.05) (Zar, 2010Zar, J.H. 2010. Biostatistical Analysis. Upper Saddle River, Prentice-Hall, 944p.). For this analysis, recaptured individuals were not considered to avoid overestimating the body size-distribution of the population, since an individual could appear in more than one sampling. To verify possible migrations between the sites, the percentage of recaptures was calculated by sampling site. Thus, to verify if A. scabra were territorial, the percentage of recaptured males and females was calculated. For this analysis, the chi-square test (( 2 ) was applied to verify differences in recapture rates between the sexes (( < 0.05) (Zar, 2010Zar, J.H. 2010. Biostatistical Analysis. Upper Saddle River, Prentice-Hall, 944p.).

To test for variations in A. scabra abundance throughout the sampled period, a linear regression analysis was performed. For this analysis, the sampling month was considered the predictor variable, while the number of individuals of shrimps was used as the response variable, considering the abundance of shrimp at each site as a sample. To verify any association of the environmental factors (temperature, rainfall, and water flow) with A. scabra abundance, a multiple linear regression was used. In addition, a multiple linear regression was also used to verify any association of environmental factors (temperature, rainfall, and water flow) with the abundance of ovigerous females.

RESULTS

A total of 233 specimens of A. scabra were collected, including 120 males (51.5 %), 71 non-ovigerous females (30.5 %) and 42 ovigerous females (18.0 %). Of the 71 non-ovigerous females, only three juveniles were observed. The total sex ratio did not differ significantly from a 1:1 (Sex ratio = 0.51, binomial test; P = 0.694; recaptured individuals excluded).

The size-frequency distribution indicated a unimodal and non-normal distribution for the A. scabra population (Shapiro-Wilk; W = 0.974; P < 0.001, Fig. 3). A total of 55 individuals were recaptured, resulting in a general recapture rate of 19.09 %. Of the recaptured individuals, 80 % (N = 44) were males and 20% (N = 11) were females. Significant differences were observed between the frequencies of recaptured males and females (Chi-square; = 19.8; d.f. = 54; P < 0.001). Individuals were recaptured in all sampling sites, 8.93 % (N = 5), 22.2 % (N = 12), 12.90 % (N = 4) and 23.13 % (N = 34), in S1, S2, S3, and S4, respectively. Recaptured individuals were always observed in the same site in which the individuals were first recorded, i.e., migrations between sites were not observed during the study period.

Figure 3.
Atya scabra (Leach, 1816). Size-frequency distribution of carapace length (mm) of the male and female shrimp sampled in São Francisco River, Sergipe, Brazil.

The mean (± SD) size of males was 17.71 ± 3.85 mm CL, in which the smallest and largest male measured 8.80 and 26.70 mm CL, respectively. The mean (± SD) size of females (non-ovigerous and ovigerous) was 13.14 ± 2.59 mm CL, in which the smallest and largest female measured 6.30 and 23.40 mm CL, respectively. The smallest ovigerous female measured 9.50 mm CL. Significant differences were observed between the sizes of A. scabra males and females (Mann-Whitney; U = 2149.0; d.f. = 232; P < 0.000). Atya scabra were distributed in 11 size classes with intervals of 2.00 mm CL. Males were observed in all size classes, with the exception of the first class (6.30˧8.30 mm CL), while females were not observed in the 20.30˧22.30 mm size class CL and in the largest size classes (24.30˧26.30 and 26.30˧28.30 mm CL). Ovigerous females were observed in the 8.3˧10.3 mm CL to 18.3˧20.3 mm CL size classes (Fig. 3).

Ovigerous females were observed in all sampling months, with the exception of January 2016, for which only males were recorded. The highest absolute number of ovigerous females was observed in February 2015 (N = 16), followed by May 2015 (N = 7). The highest proportion of ovigerous females was recorded in November (0.75), however, in this month only four females were sampled (Fig. 4A). The sex ratio did not differ significantly from a 1:1 ratio during most months (binomial test; P > 0.05). During March 2015 the sex ratio deviated from 1:1, and it was slightly skewed toward males (binomial test; P < 0.05, Fig. 4B) and in January 2016 only males were recorded.

Figure 4.
Atya scabra (Leach, 1816). (A) Proportion of adult ovigerous and non-ovigerous females and (B) sex ratio (estimate ± SE) during the months sampled. In (B), the black square indicates a deviation from a 1:1 sex ratio.

A decrease in abundance of A. scabra was observed throughout the sampling period (Linear regression; R 2 = 0.32; F = 22.18; P < 0.001), indicating a decline of about 90 % for this population in the region studied (Fig. 5A). A positive correlation between A. scabra abundance and water flow was observed (Multiple regression; F = 13.43; P < 0.001, Fig. 5B). On the other hand, the abundance of A. scabra did not vary with other environmental factors (temperature and rainfall) (Multiple regression; P > 0.05). A positive correlation between abundance of ovigerous females A. scabra and rainfall also was observed (Multiple regression; F = 13.14; P < 0.01, Fig. 5C). Similarly, the abundance of ovigerous females of A. scabra did not vary with other environmental factors (temperature and flow water) (Multiple regression; P > 0.05, Fig. 5C).

Figure 5.
Atya scabra (Leach, 1816). (A) Relationship between sampling month and number of individuals; (B) monthly variation in the number of individuals (average ± SD) and mean flow (m3/s) and (C) monthly variation in number of ovigerous females (average ± SD) and mean rainfall (mm) during the sampling period.

DISCUSSION

Population biology

Sampling was performed in the present study following the first formal record of Atya scabra for Sergipe State, Brazil by Oliveira et al. (2019Oliveira, M.C.A.; Terossi, M. and Mantelatto, F.L. 2019. Phylogeographic structuring of the amphidromous shrimp Atya scabra (Crustacea, Decapoda, Atyidae) unveiled by range-wide mitochondrial DNA sampling. Marine and Freshwater Research, 70: 1078-1093.). Despite Almeida et al. (2008Almeida, A.O.; Coelho, P.A.; Luz, J.R.; Santos, J.T.A. and Ferraz, N.R. 2008. Decapod crustaceans in fresh waters of southeastern Bahia, Brazil. Revista de Biología Tropical, 56: 1225-1254.) stating that this species occurs in Sergipe, no biological studies have been published with A. scabra individuals sampled in this locality. Their statement was based on extrapolation of its occurrence, since A. scabra had been found in adjacent regions, in the states of Ceará, Pernambuco Alagoas, and Bahia (Hobbs and Hart, 1982Hobbs Jr, H.H. and Hart, C. 1982. The shrimp genus Atya (Decapoda: Atyidae). Smithsonian Contributions to Zoology, 364: 1-143. ; Melo, 2003Melo, G.A.S. 2003. Manual de Identificação dos Crustacea Decapoda de água doce do Brasil. São Paulo, Editora Loyola, 432p.; Almeida et al., 2008Almeida, A.O.; Coelho, P.A.; Luz, J.R.; Santos, J.T.A. and Ferraz, N.R. 2008. Decapod crustaceans in fresh waters of southeastern Bahia, Brazil. Revista de Biología Tropical, 56: 1225-1254.; Pileggi et al., 2013Pileggi, L.G.; Magalhães, C.; Bond-Buckup, G. and Mantelatto, F.L. 2013. New records and extension of the known distribution of some freshwater shrimps in Brazil. Revista Mexicana de Biodiversidad, 84: 563-574.). This knowledge gap in the geographic distribution of this species is due mainly to the late records for this species in the state of Sergipe. The lack of previous sampling in this region, or its cryptic habitats, make this species difficult to sample, as it has generally been found in riverbeds and places with fast flowing currents (Rocha and Bueno, 2004Rocha, S.S. and Bueno, S.L.S. 2004. Crustáceos decápodes de água doce com ocorrência no Vale do Ribeira de Iguapé e rios costeiros adjacentes, São Paulo, Brasil. Revista Brasileira de Zoologia, 21: 1001-1010.; Melo and Coelho, 2008Melo, G.A.S. and Coelho, P.A. 2008. Atya scabra (Leach, 1815). p. 272-273. In: A.B.M. Machado; G.M. Drummond and A.P. Paglia (eds), Livro Vermelho da Fauna Brasileira Ameaçada de Extinção. Brasília, Ministério do Meio Ambiente.).

The number of individuals sampled in this study (N = 233) is low when compared to a study by Almeida et al. (2010Almeida, A.O.; Mossolin, E.C. and Luz, J.R. 2010. Reproductive biology of the freshwater shrimp Atya scabra (Leach, 1815) (Crustacea: Atyidae) in Ilhéus, Bahia, Brazil. Zoological Studies, 49: 243-252.) (N = 3752) in Bahia, but higher than that reported by Herrera-Correal et al. (2013Herrera-Correal, J.; Mossolin, E.C.; Wehrtmann, I.S. and Mantelatto, F.L. 2013. Reproductive aspects of the caridean shrimp Atya scabra (Leach, 1815) (Decapoda: Atyidae) in São Sebastião Island, southwestern Atlantic, Brazil. Latin American Journal of Aquatic Research, 41: 676-684. ) (N = 74) in São Paulo, both of which were carried out in Brazil. The difference in the number of individuals sampled may be related mainly to the methodology (sampling period and methods) and the geological characteristics of the river being sampling. The great difference in abundance observed in the study of Almeida et al. (2010Almeida, A.O.; Mossolin, E.C. and Luz, J.R. 2010. Reproductive biology of the freshwater shrimp Atya scabra (Leach, 1815) (Crustacea: Atyidae) in Ilhéus, Bahia, Brazil. Zoological Studies, 49: 243-252.) could be related to the sampling site, which was about 10 km from the mouth of the Santana River (Bahia), when compared to the present study, where the shrimp were sampled about 200 km from the mouth of the São Francisco River. In this sense, it is important to emphasize that A. scabra are considered to be amphidromous (McDowall, 2007McDowall, R.M. 2007. On amphidromy, a distinct form of diadromy in aquatic organisms. Fish and Fisheries, 8: 1-13. ; Bauer, 2013Bauer, R.T. 2013. Amphidromy in shrimps: a life cycle between rivers and the sea. Latin American Journal of Aquatic Research, 41: 633-650. ), i.e., the individual grows, mates and spawns in freshwater streams or rivers, but the planktonic larvae develop in brackish water estuaries or marine coastal waters. Upon the completion of larval development, the individual settles to the bottom as a postlarva and finds the mouth of a freshwater stream or river to migrate upstream where adults of the species are found (Hunte, 1979Hunte, W. 1979. The complete larval development of the freshwater shrimp Atya innocous (Herbst) reared in the laboratory (Decapoda, Atyidae). Crustaceana, Supplement 5: 231-242.; Abrunhosa and Moura, 1988Abrunhosa, F.A. and Moura, M.G. 1988. O completo desenvolvimento larval do camarão Atya scabra (Crustacea, Decapoda, Atyidae), cultivado em laboratório. Arquivo Ciências do Mar, 27: 127-146.; Bauer, 2013Bauer, R.T. 2013. Amphidromy in shrimps: a life cycle between rivers and the sea. Latin American Journal of Aquatic Research, 41: 633-650. ). As observed in the study of Almeida et al. (2010Almeida, A.O.; Mossolin, E.C. and Luz, J.R. 2010. Reproductive biology of the freshwater shrimp Atya scabra (Leach, 1815) (Crustacea: Atyidae) in Ilhéus, Bahia, Brazil. Zoological Studies, 49: 243-252.), a larger number of this species should be expected when sampling closer to the mouth, despite the migrations observed for this species.

The presence of ovigerous females was also observed throughout the study period, with a reproductive peak associated with rainfall, which indicates continuous seasonal reproduction. The same pattern of continuous reproduction was observed for A. scabra by Galvão and Bueno (2000Galvão, R. and Bueno, S.L.S. 2000. Population structure and reproductive biology of the Camacuto shrimp, Atya scabra (Leach, 1815) (Decapoda, Caridea, Atyidae), from São Sebastião, Brazil. p. 291-299. In: J.C. von Vaupel Klein and F.R. Schram (eds), The Biodiversity Crisis and Crustacea. Proceedings of the Fourth International Crustacean Congress. Amsterdam, Netherlands, 20-24 July 1998, vol. 2. Rotterdam/Brookfield, A.A Balkema. (Crustacean Issues, 12) ) and Almeida et al. (2010Almeida, A.O.; Mossolin, E.C. and Luz, J.R. 2010. Reproductive biology of the freshwater shrimp Atya scabra (Leach, 1815) (Crustacea: Atyidae) in Ilhéus, Bahia, Brazil. Zoological Studies, 49: 243-252.) and for Atya margaritacea A. Milne-Edwards, 1864 by Martínez-Mayén and Román-Contreras (2000Martínez-Mayén, M. and Román-Contreras, R. 2000. Aspects of the reproduction of Atya margaritacea A. Milne-Edwards, 1864 (Decapoda, Atyidae) in a population from the Mexican Pacific. Crustaceana, 73: 913-923.). In these studies, reproductive peaks were also observed during the rainy season, probably to facilitate the downstream larval dispersal of these amphidromous shrimp. This mechanism has also been observed in other species of caridean shrimps [(e.g., Macrobrachium acanthurus (Wiegmann, 1836), Macrobrachium carcinus (Linnaeus, 1758) (Valenti et al., 1986Valenti, W.C.; Mello, J.T.C. and Lobão, V.L. 1986. Dinâmica da reprodução de Macrobrachium acanthurus (Wiegmann, 1836) e Macrobrachium carcinus (Linnaeus, 1758) do Rio Ribeira de Iguape (Crustacea, Decapoda, Palaemonidae). Ciência e Cultura, 38: 1256-1262.), and Macrobrachium olfersi (Wiegmann, 1836) (Mossolin and Bueno, 2002Mossolin, E.C. and Bueno, S.L.S. 2002. Reproductive biology of Macrobrachium olfersi (Decapoda, Palaemonidae) in São Sebastião, Brazil. Journal of Crustacean Biology, 22: 367-376.)]. In contrast, the study of Palacios et al. (2008Palacios, J.S.; Álvarez, R.B. and Lozano, J.P.R. 2008. Crecimiento y reproducción del camarón Atya margaritacea (Decapoda: Atyidae) en el Río Presidio, Sinaloa, México. Revista de Biologia Tropical, 56: 513-522.) performed on A. margaritacea, showed ovigerous females only appeared in the rainy seasons. According to the results obtained in this study and the studies mentioned above for other species of Atya, females obviously regulate the reproductive period according to the rainy season. This reproductive strategy is probably related to the use of the greatest river flow during this period, which can facilitate the loading of the larvae downstream to develop in the estuary. However, at the site of the present study, the water flow was controlled by the Xingó Reservoir, which in rainy periods tends to decrease this flow. Therefore, such flow controls could cause harm to the population of A. scabra that live in this region, since females reproduce naturally during a period of higher rainfall. With this anthropogenic control, larvae hatch in periods with low flow in the river and may not reach the estuaries, implying problems in development and recruitment of the population.

In this study, males were larger than females. This pattern of sexual dimorphism (males attaining larger body sizes than females) suggests strong male-male competition for receptive females as suggested by sexual selection theory (Shuster and Wade, 2003Shuster, S.M. and Wade, M.J. 2003. Mating systems and strategies. Princeton, Princeton Univeristy Press, 552p.). These results corroborate with other studies carried out with other species in the genus [e.g., A. margaritacea (Martínez-Mayén and Román-Contreras, 2000Martínez-Mayén, M. and Román-Contreras, R. 2000. Aspects of the reproduction of Atya margaritacea A. Milne-Edwards, 1864 (Decapoda, Atyidae) in a population from the Mexican Pacific. Crustaceana, 73: 913-923.; Palacios et al., 2008Palacios, J.S.; Álvarez, R.B. and Lozano, J.P.R. 2008. Crecimiento y reproducción del camarón Atya margaritacea (Decapoda: Atyidae) en el Río Presidio, Sinaloa, México. Revista de Biologia Tropical, 56: 513-522.), and A. lanipes Holthuis, 1963 (Covich et al., 2003Covich, A.P.; Crowl, T.A. and Scatena, F.N. 2003. Effects of extreme low flows on freshwater shrimps in a perennial tropical stream. Freshwater Biology, 48: 1199-1206. )] and as reported by Galvão and Bueno (2000Galvão, R. and Bueno, S.L.S. 2000. Population structure and reproductive biology of the Camacuto shrimp, Atya scabra (Leach, 1815) (Decapoda, Caridea, Atyidae), from São Sebastião, Brazil. p. 291-299. In: J.C. von Vaupel Klein and F.R. Schram (eds), The Biodiversity Crisis and Crustacea. Proceedings of the Fourth International Crustacean Congress. Amsterdam, Netherlands, 20-24 July 1998, vol. 2. Rotterdam/Brookfield, A.A Balkema. (Crustacean Issues, 12) ) for the same species in São Paulo State (Brazil) and by Darnell (1956Darnell, R.M. 1956. Analysis of a population analysis of the tropical freshwater shrimp, Atya scabra (Leach). The American Midland Naturalist, 55: 131-138.) in Mexico. Our results support the idea that adult males may exhibit a degree of territoriality, since they were recaptured more often than females and always were recaptured at the same site of their first record. On the other hand, adult females were less recaptured, indicating that they may migrate downstream to facilitate larval drift during the hatching period.

In general, in the present study, the sex ratio of A. scabra did not differ significantly from 1:1. In species with separate sexes, as in A. scabra, sex allocation theory predicts that an equal number of males and females must be produced (the primary sex ratio) since frequency-dependent selection will act against the more common sex in the population (Fisher, 1930Fisher, R.A. 1930. The genetical theory of natural selection. Oxford, Oxford University Press, 272p.; Charnov, 1982Charnov, E.L. 1982. The theory of sex allocation. Princeton, Princeton University Press, 355p. ; West, 2009West, S. 2009. Sex allocation. Princeton, Princeton University Press , 463p.). The current 1:1 sex ratio matches that found in the population of the same species studied by Almeida et al. (2010Almeida, A.O.; Mossolin, E.C. and Luz, J.R. 2010. Reproductive biology of the freshwater shrimp Atya scabra (Leach, 1815) (Crustacea: Atyidae) in Ilhéus, Bahia, Brazil. Zoological Studies, 49: 243-252.). However, the sex ratio of A. scabra was skewed significantly in March 2015 and was biased towards males. In February 2015 and May 2015 a greater number of ovigerous females were also observed, corroborating the suggestion that ovigerous females migrate during this period while males remain territorial.

In this study, some evidence points to the fact that the population of A. scabra in the São Francisco River consists primarily of adults and probably includes a reduced number of juveniles. This evidence includes: 1) only three juvenile individuals were observed during the sampling period; 2) the smallest female (6.3 mm CL) recorded in this study was larger than the smallest ovigerous female (5.4 mm CL) recorded by Almeida et al. (2010Almeida, A.O.; Mossolin, E.C. and Luz, J.R. 2010. Reproductive biology of the freshwater shrimp Atya scabra (Leach, 1815) (Crustacea: Atyidae) in Ilhéus, Bahia, Brazil. Zoological Studies, 49: 243-252.); 3) juvenile males were not recorded and all sampled males had the appendix masculina completely developed. The absence of juveniles was also observed in the studies by Darnell (1956Darnell, R.M. 1956. Analysis of a population analysis of the tropical freshwater shrimp, Atya scabra (Leach). The American Midland Naturalist, 55: 131-138.), Galvão and Bueno (2000Galvão, R. and Bueno, S.L.S. 2000. Population structure and reproductive biology of the Camacuto shrimp, Atya scabra (Leach, 1815) (Decapoda, Caridea, Atyidae), from São Sebastião, Brazil. p. 291-299. In: J.C. von Vaupel Klein and F.R. Schram (eds), The Biodiversity Crisis and Crustacea. Proceedings of the Fourth International Crustacean Congress. Amsterdam, Netherlands, 20-24 July 1998, vol. 2. Rotterdam/Brookfield, A.A Balkema. (Crustacean Issues, 12) ) and Martínez-Mayén and Román-Contreras (2000Martínez-Mayén, M. and Román-Contreras, R. 2000. Aspects of the reproduction of Atya margaritacea A. Milne-Edwards, 1864 (Decapoda, Atyidae) in a population from the Mexican Pacific. Crustaceana, 73: 913-923.). These authors justify this absence by means of behavioral characteristics, such as size segregation related to several river microenvironments or by these juveniles associating with submerged roots of plants along the bank; as suggested by Almeida et al. (2008Almeida, A.O.; Coelho, P.A.; Luz, J.R.; Santos, J.T.A. and Ferraz, N.R. 2008. Decapod crustaceans in fresh waters of southeastern Bahia, Brazil. Revista de Biología Tropical, 56: 1225-1254.). Moreover, the almost complete absence of juveniles recorded in this study could be related to the process of upstream migration, since A. scabra is an amphidromous species (Bauer, 2013Bauer, R.T. 2013. Amphidromy in shrimps: a life cycle between rivers and the sea. Latin American Journal of Aquatic Research, 41: 633-650. ). However, according to Kikkert et al. (2009Kikkert, D.A.; Crowl, T.A. and Covich, A.P. 2009. Upstream migration of amphidromous shrimps in the Luquillo Experimental Forest, Puerto Rico: temporal patterns and environmental cues. Journal of the North American Benthological Society, 28: 233-246. ), the upstream migration is carried out by post-larvae in the genus Atya. Despite this statement, our results indicate that in some cases the migration extends into the juvenile phase, and that only during the adult phase does this species become territorial, because adult individuals were not recaptured in other sites away from where they were first recorded. This hypothesis can be reinforced by the great distance of the estuarine region in which early development (pre-juvenile) occurs relative to the localities in which the studied population was recorded (about 200 km).

Evidence of a population at risk of extinction

In this study, we evaluate the population structure of A. scabra in the stretch of the lower São Francisco River, northeast of Brazil, during one year. In 2016, this species was assessed as “Near Threatened” in the red book of Brazilian crustaceans (Mantelatto et al., 2016Mantelatto, F.L.M.; Torati, L.S.; Pileggi, L.G.; Mossolin, E.C.; Terossi, M.; Carvalho, F.; Rocha, S.S. and Magalhães, C. 2016. Avaliação dos Camarões Atiídeos (Decapoda: Atyidae). p. 92-102. In: M. Pinheiro and H. Boos (eds), Livro Vermelho dos Crustáceos do Brasil: Avaliação 2010-2014. Porto Alegre, Sociedade Brasileira de Carcinologia.). A population decline of A. scabra was previously highlighted in some regions, in the states of Rio de Janeiro and Espírito Santo, with indications of local extinctions, and in some watersheds the species disappeared completely (Melo and Coelho, 2008Melo, G.A.S. and Coelho, P.A. 2008. Atya scabra (Leach, 1815). p. 272-273. In: A.B.M. Machado; G.M. Drummond and A.P. Paglia (eds), Livro Vermelho da Fauna Brasileira Ameaçada de Extinção. Brasília, Ministério do Meio Ambiente.). In the present study, a decline of approximately 90 % of the population was observed after one year of sampling in the São Francisco River, from which it was possible to only detect seven specimens of A. scabra in January 2016. At the end of this study, other collections were attempted in the same sampling sites (e.g., March 2016 and September 2017) and no specimens of A. scabra were observed (personal observation), suggesting that such a decline is not an annual variation in abundance.

During the study period, some environmental changes were verified at the sites sampled in the São Francisco River. They were directly related to the reduction of water flow in the São Francisco River, and probably contributed to the population decline of A. scabra; among them: 1) a reduction in water flow of the São Francisco River to 1,000 m3/s from the Sobradinho and Xingó reservoirs in April 2015; and 2) a second reduction in water flow to 900 m3/s from the same reservoirs in June 2015. Even now, there is evidence that the dams are now required to release only 550 m3/s, compared with the historical average of 2900 m3/s in this section of the river (Villela, 2017Villela, S. 2017. PE: vazão do São Francisco é reduzida novamente em maior seca em quase 90 anos. EBC Agência Brasil, EBC Agência Brasil, http://agenciabrasil.ebc.com.br/geral/ noticia/201 . Accessed on 28 may 2020.
http://agenciabrasil.ebc.com.br/geral/ n...
). Dry periods can change the distribution of species in many regions, where the water discharge is usually seasonal (Chapman and Kramer, 1991Chapman, L.J. and Kramer, D.L. 1991. Limnological observations of an intermittent tropical dry forest stream. Hydrobiologia, 226: 153-166.; Rincon and Cressa, 2000Rincon, J. and Cressa, C. 2000. Temporal variability of macroinvertebrate assemblages in a Neotropical intermittent stream in northwestern Venezuela. Archiv für Hydrobiologie, 148: 421-432.). These habitats become critical to several species, especially those that migrate upstream from coastal estuaries (Benstead et al., 2000Benstead, J.P.; March, J.G. and C.M., P. 2000. Estuarine larval development and upstream post-larval migration of freshwater shrimps in two tropical rivers of Puerto Rico. Biotropica, 32: 545-548. ; Covich et al., 2003Covich, A.P.; Crowl, T.A. and Scatena, F.N. 2003. Effects of extreme low flows on freshwater shrimps in a perennial tropical stream. Freshwater Biology, 48: 1199-1206. ), as is true for A. scabra. Some immediate effects of high flows on decapod communities have been documented (Covich et al., 1991Covich, A.P.; Crowl, T.A.; Jonhson, S.L.; Varza, D. and Certain, D.L. 1991. Post-hurricane Hugo increases in Atyid shrimp abundance in a Puerto Rican montane stream. Biotropica, 23: 448-454.; 1996Covich, A.P.; Crowl, T.A.; Johnson, S.L. and Pyron, M. 1996. Distribution and abundance of tropical freshwater shrimp along a stream corridor: Response to disturbance. Biotropica, 28: 484-492.; Johnson et al., 1998Johnson, S.L.; Covich, A.P.; Crowl, T.A.; Estrada-Pinto, A.; Bithorn, J. and Wurtsbaugh, W.A. 1998. Do seasonality and disturbance influence reproduction in freshwater Atyid shrimp in headwater streams, Puerto Rico? Verhandlungen der Internationalen Vereinigung für Theoretische und Angewandte Limnologie, 26: 2076-2981.) as well as the short-term effects of low flows on pool habitats, and on the abundance of freshwater shrimp (Covich et al., 1998Covich, A.P.; Crowl, T.A.; Johnson, S.L. and Scatena, F.N. 1998. Drought effects on pool morphology and Neotropical stream benthos. p. 91-96. In: R.I. Segarra-Garcia (ed), Tropical Hydrology and Caribbean water resources. Proceedings of the Third International Symposion on Water Resources, Herdon, Virginia, Technical Publication Series, American Water Resources Associations.; 2000Covich, A.P.; Crowl, T.A. and Scatena, F.N. 2000. Linking habitat stability to floods and drougts: effects on shrimp in montane streams, Puerto Rico. Verhandlungen der Internationalen Vereinigung für Theoretische und Angewandte Limnologie, 27: 2430-2432.).

In addition, A. scabra shrimp are generally found in places with fast currents and are specialized for filter feeding in these environments (Chace, 1972Chace, F. 1972. The shrimps of the Smithsonian-Bredin Caribbean Expeditions with a Summary of the West Indian Shallow-water Species (Crustacea: Decapoda: Natantia). Smithsonian Contributions to Zoology, 98: 1-179.; Rocha and Bueno, 2004Rocha, S.S. and Bueno, S.L.S. 2004. Crustáceos decápodes de água doce com ocorrência no Vale do Ribeira de Iguapé e rios costeiros adjacentes, São Paulo, Brasil. Revista Brasileira de Zoologia, 21: 1001-1010.; Souza and Moulton, 2005Souza, M.L. and Moulton, T.P. 2005. The effects of shrimps on benthic material in a Brazilian island stream. Freshwater Biology, 50: 592-602.; Melo and Coelho, 2008Melo, G.A.S. and Coelho, P.A. 2008. Atya scabra (Leach, 1815). p. 272-273. In: A.B.M. Machado; G.M. Drummond and A.P. Paglia (eds), Livro Vermelho da Fauna Brasileira Ameaçada de Extinção. Brasília, Ministério do Meio Ambiente.). In this sense, the reduction of the water flow of the São Francisco River can negatively influence food capture, since this shrimp uses the current to filter feed, and because of this, has little energy costs. In addition, the absence of juveniles is strong evidence that recruitment failed during the study period. This interruption of the upstream return migration of the post-larvae, is indicative of the negative human impacts on this migration, contributing to the decrease of this population in the studied region.

Only a small portion of A. scabra populations are actually protected by Conservation Units. Direct actions for the conservation of atyids shrimps in Brazil are provided in the “Plano de Ação Nacional para a Conservação das Espécies Aquáticas Ameaçadas de Extinção da Bacia do Rio Paraíba do Sul” (São Paulo, Rio de Janeiro and Minas Gerais), established by Resolution ICMBio Nº 131, of December 14, 2010 and improved by Resolution ICMBio Nº 17, of October 11, 2012 and in the “Plano de Ação Nacional para Conservação das Espécies Ameaçadas e de Importância Socioeconômica do Ecossistema Manguezal”, established by Resolution ICMBio Nº 9, of January 29, 2015, which also provides actions for protection of Atya scabra (Mantelatto et al., 2016Mantelatto, F.L.M.; Torati, L.S.; Pileggi, L.G.; Mossolin, E.C.; Terossi, M.; Carvalho, F.; Rocha, S.S. and Magalhães, C. 2016. Avaliação dos Camarões Atiídeos (Decapoda: Atyidae). p. 92-102. In: M. Pinheiro and H. Boos (eds), Livro Vermelho dos Crustáceos do Brasil: Avaliação 2010-2014. Porto Alegre, Sociedade Brasileira de Carcinologia.).

Evaluation of the conservation status of A. scabra identified that the main threats to their populations were those related to the destruction of their habitats, such as the construction of dams, water extraction, river and estuarine pollution, degradation of water quality, reduction of water flow, and overfishing (De Grave et al., 2015De Grave, S.; Smith, K.G.; Adeler, N.A.; Allen, D.J.; Alvarez, F.; Anker, A.; Cai, Y.; Carrizo, S.F.; Klotz, W.; Mantelatto, F.L.; Page, T.J.; Shy, J.Y.; Villalobos, J.L. and Wowor, D. 2015. Dead shrimp blues: A global assessment of extinction risk in freshwater shrimps (Crustacea: Decapoda: Caridea). PLoS ONE, 10: 1-14.; Mantelatto et al., 2016Mantelatto, F.L.M.; Torati, L.S.; Pileggi, L.G.; Mossolin, E.C.; Terossi, M.; Carvalho, F.; Rocha, S.S. and Magalhães, C. 2016. Avaliação dos Camarões Atiídeos (Decapoda: Atyidae). p. 92-102. In: M. Pinheiro and H. Boos (eds), Livro Vermelho dos Crustáceos do Brasil: Avaliação 2010-2014. Porto Alegre, Sociedade Brasileira de Carcinologia.); all of which could potentially interrupt the longitudinal migration of the amphidromous life cycle of this shrimp (Bauer, 2011Bauer, R.T. 2011. Amphidromy and migrations of freshwater shrimps. II. Delivery of hatching larvae to the sea, return juvenile upstream migration, and human impacts. New frontiers in crustacean biology, 157-168.). Brazil has a history of human activities that degrade its rivers (Escobar, 2015Escobar, H. 2015. Mud tsunami wreaks ecological havoc in Brazil. Science, 250: 1138-1139. ) and the water flow in rivers continues to decrease, as it has for three decades (Villela, 2017Villela, S. 2017. PE: vazão do São Francisco é reduzida novamente em maior seca em quase 90 anos. EBC Agência Brasil, EBC Agência Brasil, http://agenciabrasil.ebc.com.br/geral/ noticia/201 . Accessed on 28 may 2020.
http://agenciabrasil.ebc.com.br/geral/ n...
). The presence of dams causes slow-flowing waters, often with high levels of salinization, and many native species become locally extinct while non-native species flourish because they are adapted to these new conditions (Assis et al., 2017Assis, D.A.S.; Dias-Filho, V.A.; Magalhães, A.L.B. and Brito, M.F.G. 2017. Establishment of the non-native fish Metynnis lippincottianus (Cope 1870) (Characiformes: Serrasalmidae) in lower São Francisco River, northeastern Brazil. Studies on Neotropical Fauna and Environment, 52: 228-238. ). Such mistakes cannot continue if we are to protect both human populations and native biota. Therefore, studies aimed at understanding the ecology and biology of these threatened freshwater species becomes essential to increase knowledge about these populations. Moreover, the Brazilian federal government must take urgent action to implement ecological restoration efforts to ensure that future generations can continue to use the ecosystem services provided by rivers. Significant legislative actions, including protection at the local level, need to be taken to protect this fragile ecosystem.

ACKNOWLEDGMENTS

The authors are grateful to their colleagues at the Laboratory of Carcinology at University Sergipe (UFS) for their help during the fieldwork. This study was supported by the “Fundação de Apoio à Pesquisa e à Inovação Tecnológica do Estado de Sergipe - FAPITEC/SE” and the “Conselho Nacional de Desenvolvimento Científico e Tecnológico - CNPq” for Research Scholarships (Process no. 302505/2014-8). All sampling in this study was conducted according to applicable state and federal laws (MMA/ICMBio/SISBIO #44746-1, 44746-2; SEMARH #032.000.00880/2013-3).

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Publication Dates

  • Publication in this collection
    15 Mar 2021
  • Date of issue
    2021

History

  • Received
    01 July 2020
  • Accepted
    02 Nov 2020
Sociedade Brasileira de Carcinologia Instituto de Biociências, UNESP, Campus Botucatu, Rua Professor Doutor Antônio Celso Wagner Zanin, 250 , Botucatu, SP, 18618-689 - Botucatu - SP - Brazil
E-mail: editor.nauplius@gmail.com