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CHEMICAL POTENTIALS OF HARD-CORE MOLECULES BY A STEPWISE INSERTION METHOD

ABSTRACT

A molecular simulation algorithm was implemented to calculate chemical potentials of hard-core molecular systems at high densities. The method is based on the Widom particle insertion method and the step-function character of free energy variations. The algorithm was evaluated for hard-sphere mixtures at infinite dilution approximation by varying the solute/solvent diameter ratio, for systems with reduced densities from 0.1 to 0.8. The proposed methodology was verified by comparing simulations of trimers diluted in spheres and of single-component dimer systems with results from the literature. Then, the method was applied to mixtures of hard-spheres and dimers at several conditions regarding composition, reduced density, and bond-length/diameter ratio. The results were used to validate equations of state from the literature. The proposed approach was able to obtain accurate chemical potentials for different hard-core molecular mixtures. Lower uncertainties were obtained when comparing with traditional methods, especially at high densities.

Keywords:
Chemical potential; entropy; hard-core potential; Monte Carlo simulation; Widom method

INTRODUCTION

The calculation of chemical potentials by Monte Carlo simulations has already been studied and applied to several systems, mainly to systems whose particles interact by the Lennard-Jones (LJ) potential (Torrie and Valleau, 1977Torrie, G. M. and Valleau, J. P., Nonphysical Sampling Distributions in Monte Carlo Free-energy Estimation: Umbrella Sampling. Journal of Computational Physics, 23 187-199 (1977).; Mon and Griffiths, 1985Mon, K. K. and Griffiths, R. B., Chemical potential by gradual insertion of a particle in Monte Carlo simulation. Physical Review A, 31 956-959 (1985).; Tej and Meredith, 2002Tej, M. K. and Meredith, J. C., Simulation of nanocolloid chemical potentials in a hard-sphere polymer solution: Expanded ensemble Monte Carlo. The Journal of Chemical Physics, 117, 5443 (2002).; Virnau and Müller, 2004Virnau, P. and Müller, M., Calculation of free energy through sucessive umbrella sampling. Journal of Chemical Physics, 120, 10925 (2004).; Kristóf and Rutkai, 2007Kristóf, T. and Rutkai, G., Chemical potential calculations by thermodynamic integration with separation shifting in adaptive sampling Monte Carlo simulations. Chemical Physics Letters, 445 74-78 (2007).; Boulougouris, 2010Boulougouris, G. C., Calculation of the Chemical Potential beyond the First-Order Free-Energy Perturbation: From Deletion to Reinsertion. Journal of Chemical and Engineering Data, 55, 4140-4146 (2010).). For mixtures composed of simple molecules, a great number of studies and methods are available. Some of the most common methods are listed in Dietrick et al. (1989)Dietrick, G. L., Scriven, L. E. and Davis, H. T., Efficient molecular simulation of chemical potentials. Journal of Chemical Physics, 90 2370-2385 (1989). and Kofke and Cummings (1998)Kofke, D. A. and Cummings, P. T. Precision and accuracy of staged free-energy perturbation methods for computing the chemical potential by molecular simulation. Fluid Phase Equilibria, 150-151, 41-49, (1998)., which include expanded ensemble, thermodynamic integration, Bennett's method, and umbrella sampling. Nevertheless, for systems with LJ interactions, the obtained chemical potential includes both energetic and entropic contributions.

Among the methods for chemical potential determination, the Widom test-particle insertion method (Widom, 1963Widom, B. Some Topics in the Theory of Fluid. Journal of Chemical Physics, 39, 2808-28012, (1963).) is efficient and easy to implement, but is limited to low densities and simple molecular structures (Mon and Griffiths, 1985Mon, K. K. and Griffiths, R. B., Chemical potential by gradual insertion of a particle in Monte Carlo simulation. Physical Review A, 31 956-959 (1985).; Tej and Meredith, 2002Tej, M. K. and Meredith, J. C., Simulation of nanocolloid chemical potentials in a hard-sphere polymer solution: Expanded ensemble Monte Carlo. The Journal of Chemical Physics, 117, 5443 (2002).; Koda and Ikeda, 2002Koda, T. and Ikeda, S., Test of the scaled particle theory for aligned hard spherocylinders using Monte Carlo simulation. The Journal of Chemical Physics, 116, 5825 (2002)., Mehrotra et al., 2012Mehrotra, A. S., PurI, S. and Khakhar, D. V., Field induced gradient simulations: A high throughput method for computing chemical potentials in multicomponent systems. The Journal of Chemical Physics, 136, 134108 (2012).). Under tougher conditions, however, the probability of a successful insertion becomes very low and the sampling tends to be poor. To overcome this situation, a considerable computational effort is required. Different methods have been proposed to alleviate these issues (Dietrick et al., 1989Dietrick, G. L., Scriven, L. E. and Davis, H. T., Efficient molecular simulation of chemical potentials. Journal of Chemical Physics, 90 2370-2385 (1989).; Labík and Smith, 1994Labík, S. and Smith, W. R., Scaled Particle Theory and the Efficient Calculation of the Chemical Potential of Hard Spheres in the NVT Ensemble. Molecular Simulation, 12:1, 23-31, (1994).; Labìk et al., 1995Labìk, S. Jirásek, V., Malijevský, A. and Smith, W. R., Computer simulation of the chemical potentials of fused hard sphere diatomic fluids. Chemical Physics Letters, 247 227-231 (1995).; Labik et al., 1998Labìk, S., Jirásek, V., Malijevský, A. and Smith, W. R., Modifications of the SP-MC method for the computer simulation of chemical potentials: ternary mixtures of fused hard sphere fluids. Molecular Physics, 94: 2, 385-393 (1998).; Fay et al., 1995Fay, P. J., Ray, J. R. and Wolf, R. J., Detailed balance methods for chemical potential determination. The Journal of Chemical Physics, 103, 7556, (1995).; Kofke and Cummings, 1998Kofke, D. A. and Cummings, P. T. Precision and accuracy of staged free-energy perturbation methods for computing the chemical potential by molecular simulation. Fluid Phase Equilibria, 150-151, 41-49, (1998).; Koda and Ikeda, 2002Koda, T. and Ikeda, S., Test of the scaled particle theory for aligned hard spherocylinders using Monte Carlo simulation. The Journal of Chemical Physics, 116, 5825 (2002).; Mehrotra et al., 2012Mehrotra, A. S., PurI, S. and Khakhar, D. V., Field induced gradient simulations: A high throughput method for computing chemical potentials in multicomponent systems. The Journal of Chemical Physics, 136, 134108 (2012).). With the same purpose, in this work we aim at calculating purely entropic chemical potentials (hard-core interactions) in a way that can be applied to a wide range of densities and complexities of molecular structures. These simulations of hard-core systems are important in the validation of chemical potential calculation methods (Allen and Tildesley, 1987Allen, M. P. and Tildesley, D. J., Computer simulation of liquids. Oxford Press, Oxford (1987).; Escobedo and de Pablo, 1995Escobedo, F. A. and De pablo, J. J., Chemical potential and equations of state of hard core chain molecules. The Journal of Chemical Physics, 103, 1946-1956, (1995a).; Tej and Meredith, 2002Tej, M. K. and Meredith, J. C., Simulation of nanocolloid chemical potentials in a hard-sphere polymer solution: Expanded ensemble Monte Carlo. The Journal of Chemical Physics, 117, 5443 (2002).). Besides this, the purely entropic chemical potential from these simulations corresponds to the combinatorial contribution of activity coefficients, a commonly used tool in phase equilibrium studies.

The proposed change of the insertion method consists in a gradual insertion of the solute. One can find other gradual insertion methods in the literature. For instance, Mon and Griffiths (1985)Mon, K. K. and Griffiths, R. B., Chemical potential by gradual insertion of a particle in Monte Carlo simulation. Physical Review A, 31 956-959 (1985). gradually insert or delete the solute by turning on and off the energetic interactions in two-dimensional fluids of particles with Lennard-Jones pair interaction. In another example, Tej and Meredith (2002)Tej, M. K. and Meredith, J. C., Simulation of nanocolloid chemical potentials in a hard-sphere polymer solution: Expanded ensemble Monte Carlo. The Journal of Chemical Physics, 117, 5443 (2002). applied an expanded ensemble Monte Carlo method to calculate the chemical potential of nanocolloidal particles in nanocolloid-polymer mixtures, using hard-sphere model systems. Their additional ensemble variable was the diameter of the colloidal particle taken as a hard sphere. Escobedo and de Pablo (1995)Escobedo, F. A. and De pablo, J. J,. Monte Carlo simulation of the chemical potential of polymers in an expanded ensemble. The Journal of Chemical Physics, 103, 2703-2710, (1995b). simulated hard-chain molecules in an expanded ensemble whose states varied in the chain size. They executed the state transitions by adding segments to the chain. Koda and Ikeda (2002)Koda, T. and Ikeda, S., Test of the scaled particle theory for aligned hard spherocylinders using Monte Carlo simulation. The Journal of Chemical Physics, 116, 5825 (2002). obtained the chemical potential of parallel hard-spherocylinders using two different gradual insertion methods to obtain the insertion probability. One of the methods performs a thickening of the initial point to a sphere before lengthening, while the other process thickens the test particle after lengthening. Here, we carry out the gradual insertion by scaling the solute structure proportionally until it reaches its real size in hard-core molecular systems.

CHEMICAL POTENTIAL CALCULATION

The chemical potential obtained by the Widom method for hard-core potential systems, in an ensemble with fixed volume and number of molecules, is represented by (de Souza et al., 1994De Souza, L. E. S., Stamatopoulou, A. and Ben-Amotz, D., Chemical potentials of hard sphere solutes in hard sphere solvents. Monte Carlo simulations and analytical approximations. The Journal of Chemical Physics, 100 1456-1459 (1994).; Stamatopoulou et al., 1995Stamatopoulou, A., de Souza, L. E. S., Bem-Amotz, D. and Talbot, J., Chemical potentials of hard molecular solutes in hard sphere fluids. Monte Carlo stimulations and analytical approximations. The Journal of Chemical Physics, 102 2109-2112 (1995).; Labìk et al., 1995Labìk, S. Jirásek, V., Malijevský, A. and Smith, W. R., Computer simulation of the chemical potentials of fused hard sphere diatomic fluids. Chemical Physics Letters, 247 227-231 (1995).; Frenkel and Smit, 1996FrenkeL, D. and Smit, B., Understanding molecular simulation From algorithms to applications. New York, Academic Press (1996).; Kofke and Cummings, 1998Kofke, D. A. and Cummings, P. T. Precision and accuracy of staged free-energy perturbation methods for computing the chemical potential by molecular simulation. Fluid Phase Equilibria, 150-151, 41-49, (1998).; Boulougouris et al., 1999Boulougouris, G. C., Economou, I. G. and Theodorou, D. N., On the calculation of the chemical potential using the particle deletion scheme. Molecular Physics, 96, 905-913, (1999).; Boulougouris, 2010Boulougouris, G. C., Calculation of the Chemical Potential beyond the First-Order Free-Energy Perturbation: From Deletion to Reinsertion. Journal of Chemical and Engineering Data, 55, 4140-4146 (2010).):

(1) μ R k b T = - In ( p 1 )

where kb is the Boltzmann constant and p1 is the probability of a successful solute insertion at randomly selected locations and orientations in the solvent medium.

Throughout this work, we use the terms solute and solvent to denote, respectively, the molecule being inserted and the set of molecules that already exist in the system. This is done even when all molecules are identical. Under these conditions, the residual chemical potential (μR) depends only on the probability of a successful insertion. This corresponds to the free energy variation of the solvent from the initial state in the absence of any solute (state '0') to the final state in the presence of the inserted molecule (state '1'), as illustrated in Figure 1. A hard-sphere solvent and a fused-sphere dimer solute were used as an example. Note that the solute is never really inserted in the simulated system because the successful attempts are recorded, but they are never actually performed.

Figure 1
Illustration of the Widom method. An example of dimer insertion in hard-sphere solvent at infinite dilution. The chemical potential depends only on the probability of successful insertion attempts and corresponds to the free energy variation from state '0' to state '1'.

As mentioned before, this method is limited to low densities and to molecules with simple structures (Labìk et al., 1995Labìk, S. Jirásek, V., Malijevský, A. and Smith, W. R., Computer simulation of the chemical potentials of fused hard sphere diatomic fluids. Chemical Physics Letters, 247 227-231 (1995).; Kofke and Cummings, 1998Kofke, D. A. and Cummings, P. T. Precision and accuracy of staged free-energy perturbation methods for computing the chemical potential by molecular simulation. Fluid Phase Equilibria, 150-151, 41-49, (1998).; Boulougouris et al., 1999Boulougouris, G. C., Economou, I. G. and Theodorou, D. N., On the calculation of the chemical potential using the particle deletion scheme. Molecular Physics, 96, 905-913, (1999).; Boulougouris, 2010Boulougouris, G. C., Calculation of the Chemical Potential beyond the First-Order Free-Energy Perturbation: From Deletion to Reinsertion. Journal of Chemical and Engineering Data, 55, 4140-4146 (2010).). At high densities or for systems with higher complexity, the insertion method requires a significant computational effort, that is, a large number of samples is necessary to achieve an adequate statistical sampling. In order to solve this issue, we propose here a stepwise path to the solute insertion.

The proposed path consists in inserting the molecule into the solvent in a small scale and then increasing it until the inserted solute reaches its real size. The solute structure is unaltered, in the sense that all sizes and distances vary proportionally according to a scaling factor λi ∈ [0,1], in which i represents a simulation step. For each transition of state from λi-l to λi, a Monte Carlo simulation is carried out and the chemical potentials for intermediate steps are obtained. Given that thermodynamic properties depend only on the initial and final states, the total residual chemical potential will be the sum of all stepwise contributions.

Hereafter, we show that this procedure is thermodynamically consistent. Consider an athermic, N-particle system at constant volume V whose potential energy U consists of two terms as in:

(2) U ( r 1 , r 2 ,... λ ) = j = 2 N u ( 1 , j , λ ) + i = 2 N j = i + 1 N u ( r ij )

The second term of Equation (2) represents the interaction of all other particles amongst themselves. Here, we adopted the hard-core potential model.

The first term, presented below, corresponds to the potential energy of interaction between the molecule to be inserted (1) and all other molecules in the system (j). This term depends on the coupling factor λ such that, for λ=0, the first term is “decoupled” from the system, while for λ=1 the first term corresponds to the potential energy with the molecule completely inserted. Between these two values of λ, the potential varies continuously. This dependency is generally linear, but may be non-linear as, for example, for hard-core potentials applied here.

(3) u ( 1 , j , λ ) = u ( r 1 , r 2 ,... r N 1 ), if λ = 0 u ( r 1 , r 2 ,... r N ), if λ = 1

The residual chemical potential can be defined as a partial derivative of the residual Helmholtz energy (Hill, 1960Hill, T. L., An introduction to Statistical Thermodynamics. New York: Dover Publications, 1960.) as

(4) μ R ( T , V , N ) = A R N T , V A R T , V , N A R T , V , N 1 N ( N 1 ) = A R ( T , V , N ) A R ( T , V , N 1 )

We can obtain Equation (4) for the residual chemical potential by integrating the residual free energy:

(5) μ R κ b T = μ R ( λ m ) κ b T = 1 κ b T 0 1 A R λ T , V , N d λ

Then, we rearrange to represent all the simulation steps of the proposed algorithm,

(6) μ R κ b T = 1 κ b T 0 λ 1 A R λ T , V , N d λ + 1 κ b T λ 1 λ 2 A R λ T , V , N d λ + ... + 1 κ b T λ m 1 1 A R λ T , V , N d λ

Finally, one can calculate the residual chemical potential from:

(7) μ R κ b T = μ 0 λ 1 R κ b T + μ λ 1 λ 2 R κ b T + ... + μ λ m 1 1 R κ b T = i = 1 m μ R λ i 1 λ i κ b T

Equation (7) demonstrates that the free energy variation from state '0' to state '1' is equivalent to the sum of the free energy variations between all the intermediate states as in the methodology proposed here.

For the proposed path, the coupling factor does not directly multiply the potential energy. Actually, it represents a scale factor and multiplies both the interatomic distances and atomic radii of the rigid solute molecule. This is done while maintaining the location of the geometric center and the orientation of the molecule unaltered. For λ=0, the solute molecule does not interact with the solvent. When λ=1, the solute is completely inserted into the system. In Figure 2 we illustrate the proposed path with the example of a dimer solute being inserted in a solvent of hard spheres.

Figure 2
Illustrative scheme for the proposed gradual insertion. We present a dimer insertion in a fluid of hard sphere. Each simulation step results in a free energy increment. Initially, the residual chemical potential corresponding to the insertion of the small dimer (λ1) is calculated. Then, we obtain the residual chemical potential for each step up to the last one, with the final step λm=1, which corresponds to the solute molecule at its real size.

The method performs insertion attempts of the solute on its initial scale (λ1) to obtain the insertion chemical potential increment (Δμ1R). This procedure is identical to the conventional Widom method. The other steps intend to obtain the probabilities of increasing the solute by a pre-determined increment Δλ1 of the scaling factor. Separate simulations carry out each step. This is an advantage because one can perform it in parallel. For these stages, the probability to increase the solute from a state i - 1 to the next state i is obtained by simulating the system with the solute already inserted with scale λi-1. This procedure consists of multiplying the full-size atomic radii and interatomic distances by λi = λi-1 + Δλi and recording the number of successful attempts. At the end of all simulations, the residual chemical potential between initial and final states is given by:

(8) μ R κ b T = In ( p 1 ) i = 2 m In ( p i 1 , i ),

where p1 is the probability of a successful solute insertion attempt from λ0=0 to λ1 and pi-1,i is the probability of a successful increase of the solute size from λi-1 to λi. Even though we have shown Equation (8) for a pure component, the extension to mixtures is straightforward.

MONTE CARLO SIMULATIONS

The Monte Carlo simulations followed the Metropolis method at constant volume (V) and constant number of molecules (N) for athermic systems. The hard-core potential was applied in all simulated systems to obtain only entropic contributions. Thus, we calculated the free energy taking into account only the configuration because we used no attractive energetic interactions.

The volume of the simulation box was determined from the desired reduced density ρ*=NHS/V)σs3, where σs is the diameter of the hard sphere which constitutes the solvent molecules, since in this work all the spheres present in the solvent have the same diameter and NHS is the number of hard-spheres present in the solvent. We used cubic geometry for all simulations boxes. Furthermore, we applied periodic boundary conditions in all directions. The initial configurations were generated using the software package Packmol (Martínez et al., 2009Martínez, L., Andrade, R., Brigin, E. G., Martínez J. M., PACKMOL: A Package for Building Initial Configurations for Molecular Dynamics Simulations. Journal of Computational Chemistry, 30 2157-2164 (2009).). To reduce computational effort with the overlap-test procedure, we implemented a neighbor list technique based on that of Yao et al. (2004)Yao, Z, Wang, J., Liu, G. and Cheng, M., Improved neighbor list algorithm in molecular simulations using cell decomposition and data sorting method. Computer Physics Communications, 161, 27-35, (2004). .

We reproduced each simulation ten times independently, with the purpose of estimating the residual chemical potential uncertainties. For each stage i, we obtained the average of the probability and its standard deviation (SD). As the chemical potential has the form f=μiR/kbT=Inpi, its variance at each stage was taken as:

(9) SD μ i 2 = SD p i p i 2

where SDpi and SDμi are the probability and chemical potential standard deviations at the stage i, respectively.

The estimated errors for all stages lead to a propagation of uncertainty at the final chemical potential. The final chemical potential is a linear combination of the kind f=i0mamAm, and because the replicas were independently measured there were no covariance and the combinatorial factor was null. Thus, we can obtain the standard deviation from

(10) SD μ 2 = i = 0 m SD μ i 2

where SDμ is the final chemical potential standard deviation.

Here, we define a cycle as a set of operations randomly proposed, performed in sequence. At each cycle, “N” molecules were randomly selected from the system one at a time. For each random molecule, we proposed a random operation. Because we considered a rigid molecular structure, there were only two possible moves to be performed with the solvent molecules: rotation and translation. The translation move was applied to the geometric center, with initial position r=(rx,ry,rz), according to the procedure described in Allen and Tildesley (1987)Allen, M. P. and Tildesley, D. J., Computer simulation of liquids. Oxford Press, Oxford (1987).. The rotation move was applied with a randomly chosen rotation angle between -Dqmax and Dqmax about one of the three orthonormal axis (x,y,z) also determined at random. The adopted probability of translation and rotation proposals was 50% for each. We performed these proposals for randomly selected molecules from the solvent.

In order to obtain the residual chemical potential, the first stage of the stepwise path corresponds to the Widom insertion method. The insertion of the solute molecule was attempted at each 20 cycles with λ1=0.1, that means 10% of its real scale. The fixed sampling interval does not obey the detailed balance condition, but satisfies the weaker balance condition that is considered mathematically sufficient (Manousiouthakis and Deem, 1999Manousiouthakis, V. I. and Deem, M. W., Strict detailed balance is unnecessary in Monte Carlo simulation. The Journal of Chemical Physics, 110, 2753 (1999).; Ren et al., 2007Ren, R., O'Keeffe, C. J. and Orkoulas, G., Sequential metropolis algorithms for fluid simulations. International Journal of Thermophysics, 28 520-535 (2007).; Earl and Deem, 2008Earl, D. J. and Deem, M. W., Parallel Tempering: Theory, Applications, and New Perspectives. 1-21 (2008).; Suwa and Todo, 2010Suwa, H. and Todo, S., Markov Chain Monte Carlo Method without Detailed Balance. Phys. Rev. Lett., 1-5 (2010).). For the insertion, we selected a uniformly distributed random position and a random orientation. Given the problems of non-uniformity and irreversibility described by Brannon et al. (2002)Brannon, R. M., A review of useful theorems involving proper orthogonal matrices referenced to three-dimensional physical space. Albuquerque, Sandia National Laboratories (2002). Available from: <http://www.mech.utah.edu/~brannon/public/rotation.pdf>
http://www.mech.utah.edu/~brannon/public...
, we applied the quaternion rotation to select a random orientation uniformly for the insertion step. This approach solves rotation problems in an uncomplicated way without the use of coordinates, allowing a more compact representation of the rotation and is free of the singularity problem (Karney, 2007Karney, C. F. F., Quaternions in molecular modeling. 25 595-604 (2007).).

To generate a uniform quaternion, the SHOEMAKE algorithm described by Brannon et al. (2002)Brannon, R. M., A review of useful theorems involving proper orthogonal matrices referenced to three-dimensional physical space. Albuquerque, Sandia National Laboratories (2002). Available from: <http://www.mech.utah.edu/~brannon/public/rotation.pdf>
http://www.mech.utah.edu/~brannon/public...
was used. Then, we applied the quaternion rotation matrix of the SHOEMAKE form to the geometric center of the solute structure. With the chosen orientation, we executed an attempt to insert the solute in the random position.

In the developed algorithm, the proposed coordinates were accepted or rejected according to an overlap test (Metropolis criterion). Thus, the moves that resulted in overlaps (ΔU=∞) were rejected. Those that did not result in overlaps (ΔU=0) were accepted. We verified the absence of overlaps by calculating the shortest distance between each atom of the chosen molecule to the other atoms in the system (considering the minimum image convention).

For the insertion step, the total number of attempted insertions of the small solute molecule (λi=0.1) and the number of virtually accepted ones were recorded. At the end of a simulation, we used these values to obtain the insertion probability, corresponding to the first transition, according to Equation (1). The other simulations were designed to obtain the intermediate probabilities for the gradual increases.

The algorithm implemented for the particle growth was similar to the Widom method. Instead of inserting the solute into the system, the reduced molecule was already present in the solvent. The main difference lies in that we replaced the virtual insertion attempt by a virtual increase attempt for the solute. This was done by multiplying the solute structure and diameters by the corresponding scale factor. Therefore, to increase from λi-1 to λi, we multiplied the real distance of each solute atom from the geometric center of the molecule by the scale factor λi. We did the same for the diameters. To obtain the increase in probability for each state transition, we used the number of accepted moves and the total number of attempts. For this work, we adopted an increment Δλ of 0.1. We obtained the chemical potential from Equation (8).

RESULTS AND DISCUSSION

Validation results

Initially, test simulations with the original Widom method (that is, with a single insertion step) were executed so as to reproduce simulations for highly dilute solutions of spheres in spheres carried out by de Souza et al. (1994), and of dimers in spheres performed by Stamatopoulou et al. (1995)Stamatopoulou, A., de Souza, L. E. S., Bem-Amotz, D. and Talbot, J., Chemical potentials of hard molecular solutes in hard sphere fluids. Monte Carlo stimulations and analytical approximations. The Journal of Chemical Physics, 102 2109-2112 (1995)., respectively. The successful insertion probability and chemical potential were obtained as a function of the diameter ratio, given by:

(11) d 1 = σ 1 / σ s ,

where σ1 is the segment diameter of the solute (the largest one in the case of solutes composed of distinct spheres) and σS is the diameter of the solvent.

For sphere-in-sphere solutions, a solvent medium constituted of 108 hard spheres was simulated as in de Souza et al. (1994)De Souza, L. E. S., Stamatopoulou, A. and Ben-Amotz, D., Chemical potentials of hard sphere solutes in hard sphere solvents. Monte Carlo simulations and analytical approximations. The Journal of Chemical Physics, 100 1456-1459 (1994). for reduced density values of 0.1, 0.4, and 0.8. Each run consisted of 105 Monte Carlo cycles, from which the first 104 cycles were discarded (that is, considered as equilibration cycles). In Figure 3, one can observe a good agreement between our simulation results and those from de Souza et al. (1994)De Souza, L. E. S., Stamatopoulou, A. and Ben-Amotz, D., Chemical potentials of hard sphere solutes in hard sphere solvents. Monte Carlo simulations and analytical approximations. The Journal of Chemical Physics, 100 1456-1459 (1994).. The results were also compared with the residual chemical potential at infinite dilution obtained from the Boublik-Mansoori-Carnahan-Starling-Leland (BMSCL) equation of state for hard sphere mixtures (de Souza et al., 1994De Souza, L. E. S., Stamatopoulou, A. and Ben-Amotz, D., Chemical potentials of hard sphere solutes in hard sphere solvents. Monte Carlo simulations and analytical approximations. The Journal of Chemical Physics, 100 1456-1459 (1994).), which is given by:

(12) μ i R , κ b T + 2 nd 1 3 1 η 3 + 3 η d ( d 1 2 + d 1 1 ) 1 η + ( 2 d 1 3 + 3 d 1 2 1 ) In ( 1 η ),

in which η represents the packing fraction, that is,

(13) η = π 6 N V σ s 3 = π p * 6 ,

Figure 3
Residual chemical potential at infinite dilution vs. diameter ratio for hard sphere-in-sphere mixtures. The simulation results are in good agreement with the de Souza et al. (1994) and BMCSL results. This validates our single-step insertion method for hard sphere systems.

The single-step insertion of dimers in hard-sphere solvents was simulated and the results were compared to those from Stamatopoulou et al. (1995)Stamatopoulou, A., de Souza, L. E. S., Bem-Amotz, D. and Talbot, J., Chemical potentials of hard molecular solutes in hard sphere fluids. Monte Carlo stimulations and analytical approximations. The Journal of Chemical Physics, 102 2109-2112 (1995).. In this case, the solute is a diatomic molecule with atomic diameters of 1.75 Å and 1.20 Å, and a bond length of 1.27 Å. The reduced densities of the solvent were 0.1, 0.4, and 0.8. For this system, σ1 corresponds to the diameter of the largest sphere that composes the dimer, i.e., σ1=1.75 Å. The solvent contained 108 hard-sphere particles. Again, it can be verified in Figure 4 that a good agreement occurred between the results obtained in the present work and those from Stamatopoulou et al. (1995).

Figure 4
Probability of a successful insertion (p1) vs. diameter ratio (d1) for dimer-in-sphere mixtures at infinite dilution. The simulation results are in good agreement with the results of Stamatopoulou et al. (1995)Stamatopoulou, A., de Souza, L. E. S., Bem-Amotz, D. and Talbot, J., Chemical potentials of hard molecular solutes in hard sphere fluids. Monte Carlo stimulations and analytical approximations. The Journal of Chemical Physics, 102 2109-2112 (1995).. This validates our single-step insertion method for this type of system.

We performed additional simulations by varying the density while keeping a fixed diameter ratio of 1.0 for hard-sphere systems in order to observe the density-related limitation of the Widom method. We carried out simulations at reduced densities between 0.1 and 0.9. In Figure 5, we show the results in terms of insertion probabilities to highlight the high-density problem. The insertion probabilities, shown in Figure 5a, approach zero as the density increases. This figure illustrates the increasing difficulty of inserting the solute and, consequently, of obtaining the correct probability if the original Widom method is employed. Quantitatively, the percentage deviation varied from 0.11% at ρ*=0.1 to almost 60%, at ρ*=0.9. These values exemplify the large uncertainty in the single-step method for higher density systems, with equal number of cycles. Therefore, we can verify that such a bad sampling takes place even for the simplest systems. The insertion probability difficulties are going to be worse for large molecules.

Figure 5
Probability of successful insertion vs. reduced density (ρ*). (a) Hard sphere mixtures at infinite dilution. (b) Dimer in hard spheres at high dilution. In both figures, we illustrate the problem of insertion at high densities: as the reduced density increases, the insertion probabilities approach zero.

One can verify the same behavior for homonuclear tangent dimers in spheres. We choose three diameter ratios, namely 0.2, 0.5, and 1.0. The reduced density ranged from 0.1 to 0.9. The results, shown in Figure 5b, illustrate a reduction in the probability of insertion with the increase of the system density for all three-diameter ratios. As expected, the lower the diameter ratio the higher is the insertion acceptance frequency for a given density. The percentage deviation for this system varied from 0.06%, at ρ*=0.1, to 0.9%, at ρ*=0.85, for d1=0.2. This small variation is related to the small diameter ratio, which does not present difficulties in the insertion process. For d1=0.5, we have deviations of 0.15% at ρ*=0.1and of 8.37% at ρ*=0.9. Thus, we observe the insertion difficulty becoming problematic for the direct insertion method. The increase of uncertainty with the density increase becomes even larger for d1=1.0. In this density, we have a percentage deviation of 0.15% at ρ*=0.1 to almost 30% at ρ*=0.85.

Once we had validated the basic algorithm with one-step movement (insertion), the proposed methodology with multiple steps can be tested, as presented hereafter. We validated the proposed stepwise insertion Monte Carlo method through the calculation of residual chemical potentials of highly dilute trimers in spheres. The trimers are composed of identical spheres whose centers form an equilateral triangle with side length equal to one spherical diameter, so that we could reproduce the results of Ben-Amotz et al. (1997)Ben-Amotz, D., Stamatopoulou, A. and Yoon, B.J., Three-body distribution functions in hard sphere fluids. Comparison of excluded- volume-anisotropy model predictions and Monte Carlo simulation. The Journal of Chemical Physics, 107 6831-6838 (1997).. The simulation box contained 256 spheres and the diameter ratio d11s varied from 0.1 to 0.9 at the reduced densities of 0.1, 0.5, and 0.8.

Results are presented in Figure 6 and were compared with those of Ben-Amotz et al. (1997)Ben-Amotz, D., Stamatopoulou, A. and Yoon, B.J., Three-body distribution functions in hard sphere fluids. Comparison of excluded- volume-anisotropy model predictions and Monte Carlo simulation. The Journal of Chemical Physics, 107 6831-6838 (1997)., who calculated the chemical potential with two different methodologies, both based on the Widom insertion method. One can observe an increase of residual chemical potential with the increase of the diameter ratio. Again, solutes with smaller diameter ratios require smaller free volume for successful insertions, which then lower the residual chemical potential. This effect is more important at high densities (liquid phase). From the results, we can only verify that the agreement with the literature and the calculation capacity of our method were satisfied. To compare the methods we have no exact information of the chemical potentials and the error values obtained by Ben-Amotz et al (1997)Ben-Amotz, D., Stamatopoulou, A. and Yoon, B.J., Three-body distribution functions in hard sphere fluids. Comparison of excluded- volume-anisotropy model predictions and Monte Carlo simulation. The Journal of Chemical Physics, 107 6831-6838 (1997)..

Figure 6
Chemical potential of trimers in spheres at infinite dilution vs. diameter ratio. The calculated residual chemical potentials were consistent with those from Ben-Amotz et al. (1997). Therefore, the algorithm was capable of obtaining the chemical potential for molecules with a non-colinear geometry. We observe an increase of chemical potential with the increase of the diameter ratio.

We also applied the proposed method to systems constituted only of dimer molecules. Similar simulations were performed by Labìk et al. (1995)Labìk, S. Jirásek, V., Malijevský, A. and Smith, W. R., Computer simulation of the chemical potentials of fused hard sphere diatomic fluids. Chemical Physics Letters, 247 227-231 (1995). for a homonuclear, tangent dimer solute at reduced densities of 0.5, 0.6, 0.7, 0.8, and 0.9. They simulated systems with lower diameter solute and extrapolated the results to obtain the chemical potentials for higher diameters. We carried out all simulations with 600 solvent particles for this system. The results presented in Table 1 and Figure 7 show good agreement with those from Labìk et al. (1995)Labìk, S. Jirásek, V., Malijevský, A. and Smith, W. R., Computer simulation of the chemical potentials of fused hard sphere diatomic fluids. Chemical Physics Letters, 247 227-231 (1995). for "n=3" (polynomial order of the extrapolation equation), considered by the authors as their more accurate results. Table 1 and Figure 7 also contain calculated residual chemical potentials from the Generalized Flory-(r'-mer) Theory (GF-Theory) (Escobedo and de Pablo, 1995Escobedo, F. A. and De pablo, J. J,. Monte Carlo simulation of the chemical potential of polymers in an expanded ensemble. The Journal of Chemical Physics, 103, 2703-2710, (1995b).; Honnell and Hall, 1989Honnell, K. G. and Hall, C. K. A, new equation of state for athermal chains. The Journal of Chemical Physics, 90, 1841 (1989).) equation of state, which are also close to our values. In addition, it can be verified that the calculated errors were smaller than those from Labìk et al. (1995)Labìk, S. Jirásek, V., Malijevský, A. and Smith, W. R., Computer simulation of the chemical potentials of fused hard sphere diatomic fluids. Chemical Physics Letters, 247 227-231 (1995)., showing that the use of the proposed methodology can obtain reliable values for chemical potentials with lower uncertainty.

Table 1
Residual chemical potential for homonuclear, tangent dimer system.

Figure 7
Chemical potential of dimers in dimers at infinite dilution vs. reduced density. The calculated residual chemical potentials were consistent with those from Labìk et al. (1995)Labìk, S. Jirásek, V., Malijevský, A. and Smith, W. R., Computer simulation of the chemical potentials of fused hard sphere diatomic fluids. Chemical Physics Letters, 247 227-231 (1995). and the GF-Theory model. As expected, we observe an increase of chemical potential as the density increases.

Sphere + dimer mixtures

We applied the proposed methodology to mixtures of hard spheres (1) and dimers (2) of varying concentrations and at reduced density of mixture (defined as p*=NHS1/Vσ13+2NHS2/Vσ23, in which σ12 of 0.1, 0.4, and 0.8. For all simulations, the adopted increment for the scale factor was ∆λ= 0.1. At each density, sphere+dimer mixtures with different concentrations were considered as the solvent, while either a dimer or a hard sphere was considered as the solute. Each run contained 107 cycles, from which the 500000 initial ones were discarded, and 475000 transitions were attempted in each stage of solute growth. We tested simulation boxes with 300, 500, 800, and 1200 particles to check for finite-size effects. The chosen number of particles was equal to 800 for r* = 0.8 and 300 for lower densities (0.4 and 0.1). Note that all dimers simulated in this mixture were homonuclear and tangent, and we assumed the diameter ratio to be unitary.

We present the obtained residual chemical potentials in Figure 8a for hard spheres and in Figure 8b for dimers. The results were compared with predictions of the GF-Theory as presented by Escobedo and de Pablo (1995)Escobedo, F. A. and De pablo, J. J,. Monte Carlo simulation of the chemical potential of polymers in an expanded ensemble. The Journal of Chemical Physics, 103, 2703-2710, (1995b).. For pure systems, the chemical potential of each component (μiR,º) was obtained from the integration of the equation of state, expressed in terms of compressibility factor (Z) of hard chains as:

(14) Z = 1 + c 1 η + c 2 η 2 + c 3 η 3 1 η 3 .

Figure 8
Residual chemical potential of solute vs. dimer fraction in the solvent, at the reduced densities of 0.1, 0.4 and 0.8. (a) Sphere as solute. (b) Dimer as solute. The residual chemical potential decreases with increasing concentration of dimers for both solutes. This behavior is consistent with the fact that a dimer molecule contains a greater volume of void space.

The constants used for the equation of state model were taken from Escobedo and de Pablo (1995). For a sphere (monomer), they are c1=1.0, c2=1.0, and c3=1.0, while for dimers they are c1=2.45696, c2=4.10386, and c3=3.75503.

For binary mixtures, an analogy to GF-Theory (Honnell and Hall, 1989Honnell, K. G. and Hall, C. K. A, new equation of state for athermal chains. The Journal of Chemical Physics, 90, 1841 (1989).; Escobedo and de Pablo, 1995Escobedo, F. A. and De pablo, J. J,. Monte Carlo simulation of the chemical potential of polymers in an expanded ensemble. The Journal of Chemical Physics, 103, 2703-2710, (1995b).) proposed by Honnell et al. (1989)Honnell, K. G. and Hall, C. K. A, new equation of state for athermal chains. The Journal of Chemical Physics, 90, 1841 (1989). was applied as a free volume correction. For a two-component system, we applied the analogy as:

(15) Y n , 1 = v L , 1 v L , 2 v L , 2 ϰ 2 ,

(16) Y n , 2 = v L , 1 v L , 2 v L , 1 ϰ 1 ,

(17) μ 1 , mix R = ( Y n , 1 + 1 ) μ 1 R , ° + Y n , 1 μ 2 R , ° ,

(18) μ 2 , mix R = ( Y n , 2 + 1 ) μ 2 R , ° + Y n , 1 μ 1 R , ° ,

where Yn corresponds to a correction term based on free volume differences between dimer and monomer systems, representing the free volume change with the presence of other components. The term VL,1 is the free volume of a system constituted only of monomers and the term VL,2 is the free volume of a system constituted only of dimers. The values used were vL,1 and vL,2 (Escobedo and de Pablo, 1995Escobedo, F. A. and De pablo, J. J,. Monte Carlo simulation of the chemical potential of polymers in an expanded ensemble. The Journal of Chemical Physics, 103, 2703-2710, (1995b).).

When x1→0 we have that Yn,2→0, and the residual chemical potentials turn into μ2R,º (pure) and μ1R, (infinite dilution). In addition, when x1→1, Yn,2 becomes the correction for the case in which all solvent particles are replaced by hard-spheres and we have μ1R,º and μ2R,.

In Figure 8 one can observe good agreement between simulation results and equation-of-state calculations regarding residual chemical potentials of components 1 and 2 at mixtures with different compositions, especially at the lowest densities. As expected, the equation of state presented larger deviations at the highest density, ρ*=0.8. However, the results followed a similar trend.

In Figure 8 the residual chemical potentials of both spheres and dimers decrease with increasing concentration of dimers. We expected this behavior because the arrangement of dimer molecules results in a greater volume of interstices due to their geometric constraint. Thus, a higher concentration of dimer molecules makes it easier to insert the solute and, consequently, lowers the residual chemical potential. Although we have simulated different size boxes, the percentage deviations presented a small variation between the different densities, compared with the single-step method. For the hard-sphere residual chemical potential, the percentage deviation was in the range of 0.083 to 0.177%. For the dimer residual chemical potential, that range was from 0.02 to 0.20%.

To study the effect of free volume, we calculated the residual chemical potential of dimers with different ratios of bond length/sphere diameter (1/σ1) at infinite dilution having hard spheres as solvents. In Figure 9, the 1/σ ratio variation for homonuclear dimer particles is illustrated. Observe that, when 1/σ is zero, the dimer is reduced to a sphere, thus identical to the solvent molecules. At the other extreme (1/σ=1), the dimer becomes a pair of tangent spheres.

Figure 9
Representation of bond length/diameter ratio values.

In Figure 10, at low densities, there is almost no difference among the curves. This can be assigned to the largely similar solute structures and a larger interstitial space present at low densities. Nonetheless, the difference increases as the reduced density also increases. At high densities, the interstitial space becomes increasingly restricted and, accordingly, the bond length becomes an important factor for the insertion probability. For higher 1/σ ratio values, the residual chemical potential increases. Thus, a dimer with greater bond length is more difficult to insert. We observe a linear relationship between the chemical potential and the 1/σ ratio at all studied densities. The curve slope increases with increasing density, from 0.2334 at ρ*=0.1 to 8.3414 at ρ*=0.8. This quantifies the great influence of density in calculating the chemical potential in a way that makes other factors such as the bond length more influential.

Figure 10
Residual chemical potential of dimers at infinite dilution vs. l/σ ratio, for different reduced densities ρ*. The influence of l/σ on the residual chemical is linear in all densities studied.

CONCLUSIONS

The application of the Widom insertion method is a traditional way to obtain chemical potentials. However, it is limited to simple and low-density systems because its computational demand tends to become impracticable for complex molecules, especially at high densities. Based on the Widom method, we proposed an intermediate path to obtain chemical potentials of rigid molecules with hard-core potential in order to overcome the Widom method's limitation.

We validated the implemented Monte Carlo algorithm by comparing results obtained by the Widom method for sphere and dimer solutes infinitely diluted in sphere solvents. We verified the proposed methodology by comparing simulations of trimers in spheres and dimers in dimers with results from the literature. The proposed method generated similar results with lower uncertainties, especially at high densities. Then, we applied the method to systems constituted of hard-spheres and dimers. We analyzed the behavior of chemical potentials with dimer concentration to investigate the potential use of the proposed method in thermodynamics studies. The calculated residual chemical potential of each component decreases as the dimer concentration becomes higher. It corresponds to the expected behavior because dimers systems present more free space. In turn, the obtained uncertainty is promising for the obtainment of entropic residual chemical potentials even at higher densities, allowing its use in systems in the liquid state. We also obtained the residual chemical potential at infinite dilution of a dimer in hard spheres varying its bond length. We observed that the bond length had a higher influence in higher density systems.

In general, the methodology of gradual solute insertion was effective for both low and high densities for all systems studied. The calculated residual chemical potentials were consistent with the expected results. Future work will explore the range of applicability of this method to systems with increased complexity such as hard chain and real systems. In addition, the study of the applied λ increment is necessary.

  • This is an extended version of the manuscript presented at the VIII Brazilian Congress of Applied Thermodynamics, CBTermo 2015, Aracaju, Brazil.

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Publication Dates

  • Publication in this collection
    Apr-Jun 2018

History

  • Received
    29 Apr 2016
  • Reviewed
    04 Oct 2016
  • Accepted
    24 Nov 2016
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