Acessibilidade / Reportar erro

Screening of bacterial isolates antagonists and suppressors of blast in rice plants

Seleção de isolados bacterianos antagonistas e supressores de brusone em plantas de arroz

ABSTRACT

Grain yields of rice (Oryza sativa) are affected globally by rice blast (Magnaporthe oryzae). The main objective of this study was to identify isolates of rhizobacterial antagonists of M. oryzae (BRM10781) and screen the most effective isolates for suppressing rice blast under greenhouse conditions. Two assays (E1 and E2) were performed with 22 treatments in a completely randomized design with three replicates. E1 investigated in vitro antagonism between 21 isolates and M. oryzae under laboratory conditions. The E2 experiments were conducted under greenhouse conditions, with rice cultivar BRS Primavera seeds in plastic trays containing 3 kg of fertilized soil. After 21 days, the rice leaves were spray-inoculated with a bacterial cell suspension (1 × 108 CFU) and M. oryzae (3 × 105 conidia.mL-1) or with water (absolute control). Seven isolates, Serratia marcescens (BRM65918, BRM65923, BRM65926, and BRM63532), Bacillus cereus (BRM65919), Stenotrophomonas nitritireducens (BRM65917), and Priestia megaterium (BRM65929), reduced radial growth of M. oryzae colonies from 80.26 to 77.33%. The best leaf blast severity reducers were Pseudomonas nitroreducens (BRM32112), B. thuringiensis (BRM65928), P. megaterium (BRM65916), S. marcescens (BRM65918), S. nematodiphila (BRM63522), and Enterobacter hormaechei (BRM65925), varying from 97 to 95% respectively. The isolate BRM65918 (S. marcescens) showed the best efficiency for both antagonism and disease suppression, indicating its potential as a bioproduct for the biocontrol of rice blast in rice plants.

Keywords:
Bioagents; Biocontrol; Inoculation; Magnaporthe oryzae ; Oryza sativa

RESUMO

A produtividade do arroz (Oryza sativa) é afetado mundialmente pela brusone do arroz (Magnaporthe oryzae). O principal objetivo deste estudo foi identificar isolados de rizobactérias antagonistas de M. oryzae (BRM10781) e selecionar os isolados mais eficazes para suprimir a brusone do arroz em condições de casa de vegetação. Foram realizados dois ensaios (E1 e E2) com 22 tratamentos em um delineamento inteiramente casualizado com três repetições. E1 investigou o antagonismo in vitro entre 21 isolados e M. oryzae em condições de laboratório. O experimento E2 foi conduzido em condições de casa de vegetação, com sementes de arroz da cultivar BRS Primavera em bandejas plásticas contendo 3 kg de solo adubado. Após 21 dias, as folhas de arroz foram inoculadas por aspersão com uma suspensão de células bacterianas (1 × 108 UFC) e M. oryzae (3 × 105 conídios.mL-1) ou com água (controle absoluto). Sete isolados, Serratia marcescens (BRM65918, BRM65923, BRM65926 e BRM63532), Bacillus cereus (BRM65919), Stenotrophomonas nitritireducens (BRM65917) e Priestia megaterium (BRM65929), reduziram o crescimento radial de colônias de M. oryzae de 80,26 para 77,33%. Os melhores supressores da severidade da brusone foliar foram Pseudomonas nitroreducens (BRM32112), B. thuringiensis (BRM65928), P. megaterium (BRM65916), S. marcescens (BRM65918), S. nematodiphila (BRM63522) e Enterobacter hormaechei (BRM65925), variando de 97 a 95%, respectivamente. O isolado BRM65918 (S. marcescens) apresentou a melhor eficiência tanto para o antagonismo quanto para a supressão da doença, indicando seu potencial como bioproduto para o biocontrole da brusone em plantas de arroz.

Palavras-chave:
Bioagentes; Biocontrole; Inoculação; Magnaporthe oryzae ; Oryza sativa

INTRODUCTION

Upland rice cultivation systems are affected by both biotic and abiotic factors. Biotic stresses, such as blast caused by the pathogen Magnaporthe oryzae (Herbet) Barr. [anamorph Pyricularia oryzae (Cook) Sacc] can lead to losses, low performance, and negative effects on production (ENEBE; BABALOLA, 2018ENEBE, M. C.; BABALOLA, O. O. The influence of plant growth-promoting rhizobacteria in plant tolerance to abiotic stress: a survival strategy. Applied Microbiology and Biotechnology, 102: 7821-7835, 20 2018.). Rice blast disease (M. oryzae) is the most destructive disease. Its distribution is geographically wide and occurs in practically all regions where rice is grown. The disease can infect leaves, stalks, panicles, and consequently, seeds, which can lead to a 100% loss in yield, destroying approximately 10–30% of the world’s rice harvested (FILIPPI et al., 2011FILIPPI, M. C. C. et al. Leaf blast (Magnaporthe oryzae) suppression and growth promotion by rhizobacteria on aerobic rice in Brazil. Biological Control, 58: 160-166, 2011.; BEZERRA et al., 2021BEZERRA, G. A. et al. Evidence of Pyricularia oryzae adaptability to tricyclazole. Journal of Environmental Science and Health, Part B, 56: 869-876, 2021.). Disease control depends on integrated management, including planting resistant cultivars, cultural practices, and fungicide applications.

Genetically improved cultivars are primarily selected for their vertical resistance to the most common pathogens in the population. Despite the sequential release of genetically improved cultivars for blast resistance, variability in pathogen populations renders genetic resistance fragile (FILIPPI et al., 2011FILIPPI, M. C. C. et al. Leaf blast (Magnaporthe oryzae) suppression and growth promotion by rhizobacteria on aerobic rice in Brazil. Biological Control, 58: 160-166, 2011.; SOUZA et al., 2015SOUZA, A. C. A. et al. Enzyme-Induced Defense Response in the Suppression of Rice Leaf Blast (Magnaporthe oryzae) By Silicon Fertilization and Bioagents. International Journal of Research Studies in Biosciences (IJRSB), 3: 22-32, 2015.). Thus, the instability of the vertical resistance of improved cultivars, combined with the size of the planted area and excess nitrogen fertilizers, leads farmers to use fungicides indiscriminately, even on the eve of grain harvest, increasing the chances of grains containing fungicide residues (FILIPPI et al., 2011FILIPPI, M. C. C. et al. Leaf blast (Magnaporthe oryzae) suppression and growth promotion by rhizobacteria on aerobic rice in Brazil. Biological Control, 58: 160-166, 2011.). Chemical control is one of the most harmful methods of disease control. If not part of sustainable management, it can negatively affect the environment by leaving residues and harming the environment and human health (WIRASWATI et al., 2019WIRASWATI, S. et al. Antifungal activities of bacteria producing bioactive compounds isolated from rice phyllosphere against Pyricularia oryzae. Journal of Plant Protection Research, 59: 86-94, 2019.).

Nevertheless, given the projections of population growth, in contrast to societal concerns about the impacts of the indiscriminate use of pesticides, biological control is considered an attractive contribution to the reduction of environmental and social impacts (PRATHAP; RANJITHA KUMARI, 2017PRATHAP, M.; RANJITHA KUMARI, B. D. Bioformulation in biological control for plant diseases - A Review. International Journal of Biotech Trends and Technology, 22: 1-8, 2017.). Plant Growth Promoter Rhizobacteria (PGPR) is an effective biocontrol agent to combat economically important crop pathogens. They are considered an eco-friendly and sustainable approach to managing plant diseases.

Many studies have been conducted on rice plant endophytes and rhizosphere microorganisms that exhibit antagonistic activity against rice pathogens (MARTINS et al., 2020MARTINS, B. E. D. M. et al. Characterization of bacterial isolates for sustainable rice blast control. Revista Caatinga, 33: 702-712, 2020.). Some research teams have shown successful examples. Rais et al. (2018)RAIS, A. et al. Antagonistic Bacillus spp. reduce blast incidence on rice and increase grain yield under field conditions. Microbiological Research, 208: 54-62, 2018. selected Bacillus spp. as an antagonist of M. oryzae, which reduced the blast incidence in rice and increased grain yield under field conditions. Oliveira et al. (2020)OLIVEIRA, M. I. S., et al. Formulations of Pseudomonas fluorescens and Burkholderia pyrrocinia control rice blast of upland rice cultivated under no-tillage system. Biological control, 144: 1-6, 2020. evaluated the potential of four liquid formulations containing Burkholderia cepacia (BRM32111) and Serratia sp. (BRM32113) in rice fields. All treatments were efficient in suppressing leaf and panicle blast and promoting biomass increase and grain yield, and could be included in the integrated management of blast control in rice fields.

Among the rice diseases, sheath blight (Rhizoctonia solani) causes significant yield losses in rice (Oryza sativa L.). Looking for its sustainable management, Ajulo et al. (2023)AJULO, A. A. et al. Screening bacterial isolates for biocontrol of sheath blight in rice plants. Journal of Environmental Science and Health, Part B, 58: 426-435, 2023. taxonomically identified and evaluated 21 isolates of rhizobacteria. The authors identified BRM32112 (Pseudomonas nitroreducens), BRM65929 (Priestia megaterium), and BRM65919 (Bacillus cereus) as antagonists of R. solani, and BRM63523 (Serratia marcescens), BRM65923, BRM65916 (P. megaterium), and BRM65919 (B. cereus) as sheath blight suppressors under greenhouse conditions. The main objective of this study was to evaluate 21 isolates as potential antagonists of M. oryzae and leaf blast suppressors.

MATERIAL AND METHODS

The experimental area is located at Fazenda Capivara, Embrapa Rice and Beans, in the municipality of Santo Antônio de Goiás, GO, Brazil (16°28’00” S and 49°17”00” W). The region has an altitude of 823 m, and the predominant climate is tropical, with two well-defined seasons: a rainy season (October–April) and a dry season (May–September). Soil chemical analysis of the experimental area (0–20 cm depth) was performed as described by Claessen (1997)CLAESSEN, M. E. C. (ORG.). Manual de métodos de análise de solo. 2. ed. 1997. Disponível em: <http://www.infoteca.cnptia.embrapa.br/infoteca/handle/doc/330804>. Acesso em: 15 ago. 2022.
http://www.infoteca.cnptia.embrapa.br/in...
. The experiment was conducted in a greenhouse between November 2021 and November 2022.

Microorganisms

The bacterial isolates used in this study belonged to the Multifunctional Collection of Microorganisms from Embrapa Rice and Beans and were taxonomically identified by Ajulo et al. (2023)AJULO, A. A. et al. Screening bacterial isolates for biocontrol of sheath blight in rice plants. Journal of Environmental Science and Health, Part B, 58: 426-435, 2023.. The NCBI and local codes, taxonomic identification, and treatment descriptions are presented in Table 1. All bacterial isolates were obtained from the roots of cv. BRS Primavera cultivated in the agroecological systems. The strains were preserved using the Castellani method (CAPRILES; MATA; MIDDELVEEN, 1989CAPRILES, C. H.; MATA, S.; MIDDELVEEN, M. Preservation of fungi in water (Castellani): 20 years. Mycopathologia, 106: 73-79, 1989.) and deep freezing. The bacterial isolates were transferred and cultured in Petri plates containing Nutrient Agar (NA), which were then incubated for 48 h at 28°C.

Table 1
Treatments, local and NCBI codes, and Taxonomic identification of the bacterial isolates applied for testing leaf Blast suppression.

Antagonism between bacterial isolates and M. oryzae in vitro

M. oryzae (BRM10781) was grown in Petri dishes containing PDA medium for nine days at 28ºC. The assays were conducted in a completely randomized design with 21 treatments and a control (M. oryzae), with five repetitions each. Five mm mycelium discs from colonies of M. oryzae were placed in the center of the Petri dish, and 20 µL of bacterial suspensions were distributed at four equidistant points (MARTINS et al., 2020MARTINS, B. E. D. M. et al. Characterization of bacterial isolates for sustainable rice blast control. Revista Caatinga, 33: 702-712, 2020.). The plates of M. oryzae were incubated at 28ºC under continuous fluorescent light. Plates containing only M. oryzae mycelium discs were used as positive controls. After nine days of incubation, the evaluation was performed, measuring the diameter of the pathogen colonies compared to the control treatment.

Rice blast suppression under greenhouse conditions

Seeds of the cultivar BRS Primavera were disinfected with sodium hypochlorite (1 min), 70% alcohol (1 min), and distilled water before planting. Plastic trays measuring 15 cm × 30 cm × 10 cm were filled with approximately 3 kg of unsterilized soil. A fertility analyses was performed: pH in H2O 5.8, pH in CaCl2 0.01 M 4.5, Ca 27.7 mmolc dm–3, Mg 11.2 mmolc dm–3, Al 0 mmolc dm–3, H + Al 17 mmolc dm–3, P 1.6 mmolc dm–3, K 100 mmolc dm–3, Cu 1.1 mg dm–3, Zn 1.8 mg dm–3, Fe 11.3 mg dm–3, Mn 27.2 mg dm–3, and soil organic matter 42.7 g dm–3. Soil fertilization was performed by applying 5 g NPK (5-30-15) + 1.5 g ammonium sulfate at the sowing time and 3 g ammonium sulfate 17 days after planting. Seeds were sown in eight furrows of approximately 4 cm in length. The experimental design was completely randomized, with 22 trials (21 rhizobacterial isolates and one control) and three repetitions. The treatments consisted of mixing M. oryzae conidial suspension and rhizobacterial cells.

Bacterial suspension

Twenty-one rhizobacterial isolates were transferred and cultured in Petri plates containing Nutrient Agar (NA), which were then incubated for 48 h at 28°C. The bacteria were cultivated in Petri dishes containing nutrient agar medium at 28°C for 24 h. Then, with the aid of a platinum loop, a portion of the bacteria grown on the plates was collected and placed in an autoclaved Erlenmeyer flask containing nutrient broth (100 mL) to prepare bacterial suspensions, which were left for 24 h with stirring at 140 rpm. The concentration of the bacterial suspension was adjusted to an absorbance of 0.5 at a wavelength of 540 nm, corresponding to a concentration of 1 × 108 CFU.mL-1 (FILIPPI et al., 2011FILIPPI, M. C. C. et al. Leaf blast (Magnaporthe oryzae) suppression and growth promotion by rhizobacteria on aerobic rice in Brazil. Biological Control, 58: 160-166, 2011.; MARTINS et al., 2020MARTINS, B. E. D. M. et al. Characterization of bacterial isolates for sustainable rice blast control. Revista Caatinga, 33: 702-712, 2020.).

Conidia suspension of M. oryzae

Mycelial fragments of isolate BRM10781 were transferred to sterile Petri dishes containing PDA medium (potato agar). Plates were incubated under continuous fluorescent light at 25ºC ± 2 and humidity above 80% for seven days. After two days, using distilled water and a brush, the conidia were removed and filtered with sterelized tissue. Conidium counting was performed in a Neubauer chamber and optical microscope, and the concentration was adjusted to 3 × 105 conidia.mL-1, according to Filippi and Prabhu (2001)FILIPPI, M. C.; PRABHU, A. S. Phenotypic virulence analysis of Pyricularia grisea isolates from Brazilian upland rice cultivars. Pesquisa Agropecuária Brasileira, 36: 27-35, 2001..

Rice leaves spray inoculation

At 21 days after planting, the rice plants were sprayed with 15 mL of a bacterial suspension (1×108 CFU.mL-1), mixed with 15 mL of M. oryzae conidial suspension (final concentration 3 × 105 conidia.mL-1) (ARRIEL-ELIAS et al., 2023ARRIEL-ELIAS, M. T. et al. Molecular networking as a tool to annotate the metabolites of Bacillus sp. and Serratia marcescens isolates and evaluate their fungicidal effects against Magnaporthe oryzae and Bipolaris oryzae. 3 Biotech, 13: 1-11, 2023.). The rice trays were separated into plastic boxes to isolate the treatments.

Following inoculation, the challenged plants were subjected to temperatures that fluctuated between 28 and 30ºC and up to 90% humidity in the greenhouse, inside the plastic boxes covered with a transparent plastic top to favor the infection development. Eight days after inoculation, based on the percentage of leaf area affected by the disease, 10 plants per treatment were evaluated, with three leaves per plant for a total of 1,320. Severity assessments of blast on the leaves were performed eight days after inoculation, through the percentage of the leaf area affected by the disease on the first open leaf, using a scale of 10 degrees (0, 0.5, 1, 2, 4, 8, 16, 32 and 82%) according to Notteghem (1981)NOTTEGHEM, J. L. Cooperative experiment on horizontal resistance to rice blast. In: INTERNATIONAL RICE RESEARCH INSTITUTE. (Ed.). Blast and upland rice: report and recommendations from the meeting for international collaboration in upland rice improvement. Los Baños, Filipinas. 1981, p. 43-51., determining the percentage of leaf area affected by the disease.

Statistical analysis

The averages of each test were calculated, the variances analyzed, and the proportions were compared using the Scott-Knott at 5% significance using the R platform (R CORE TEAM, 2023R CORE TEAM. R: A Language and Environment for Statistical Computing. Vienna, Austria, 2023. Disponível em: <https://www.R-project.org/>. Acesso em: 10 jan. 2023.
https://www.R-project.org/...
).

RESULTS AND DISCUSSION

Among the 21 isolates tested, five belong to the species Bacillus cereus, one to B. thuringiensis, three to Priestia megaterium, six to Serratia marcescens, one to S. nematodiphila, two to Stenotrophomonas spp., two to Enterobacter spp. and one to Pseudomonas nitroreducens, according to Ajulo et al. (2023)AJULO, A. A. et al. Screening bacterial isolates for biocontrol of sheath blight in rice plants. Journal of Environmental Science and Health, Part B, 58: 426-435, 2023..

Analysis of the antagonistic data revealed a statistically significant difference between treatments. The comparison between the means organized the treatments into four groups (Figures 1 and 2). Group 1 was the most efficient at reducing the area of the M. oryzae colony, from 80.26 to 77.33%. Group 1 comprised four isolates of S. marcescens, one of B. cereus, one of P. megaterium, and one of S. nitritireduncens. Group 2 comprised 12 isolates, reducing M. oryzae colonies’ area from 76.69 to 74.52%. In group 3, isolate BRM65920 (S. marcescens) reduced by 72%, and BRM65916 (P. megaterium) represented group 4 with 66% of colony reduction area (Figures 1 and 2).

Figure 1
Antagonism assay between M. oryzae and 21 Rhizobacteria in vitro. A) The M. oryzae colony area was reduced by four groups of rhizobacteria isolates. Different letters are statistically different by the Scott-Knott test (p < 0.05). Group 1 (BRM65919, BRM65918, BRM65917, BRM65923, BRM65926, BRM65929 and BRM63523); Group 2 (BRM65915, BRM65925, BRM65921, BRM63525, BRM65930, BRM65927, BRM65928, BRM65922, BRM63521, BRM65924, BRM63522 and BRM32112); Group 3 (BRM65920); Group 4 (BRM65916). Petri dishes containing PDA with M. oryzae colony surrounded by different isolates of Rhizobacteria: B) S. marcescens (BRM65918); C) P. megaterium (BRM65929); D) P. nitroreducens (BRM32112); E) B. cereus (BRM65927); F) S. marcescens (BRM65920); G) P. megaterium (BRM65916).

Figure 2
In vitro antagonism between 21 rhizobacteria isolates and control and rice pathogens was evaluated by the pairing method with Magnaporthe oryzae. Group 1: A) BRM63523; B) BRM65917; C) BRM65918; D) BRM65919; E) BRM65923; F) BRM65926; G) BRM65929. Group 2: H) BRM32112; I) BRM63521; J) BRM63522; K) BRM63525; L) BRM65915; M) BRM65921; N) BRM65922; O) BRM65924; P) BRM65925; Q) BRM65927; R) BRM65928; S) BRM65930. Group 3: T) BRM65920. Group 4: U) BRM65916. V) Control. For details on the isolates’ species, see Table 1.

After identification as a good antagonist, the next step for bioagent selection should be testing in the greenhouse, evaluating the efficiency of the same isolates on disease suppression in interaction among the host, pathogen, and beneficial microorganisms. The greenhouse assay revealed that, among the 21 treatments, all bacterial isolates reduced leaf blast severity, differing from the control treatment. The lowest leaf blast severity was observed following treatment T22, BRM32112 (Pseudomonas nitroreducens). Leaf blast reduction was approximately 97% (Figure 3, Table 2).

Table 2
Efficiency of 21 bacterial isolates on reducing Magnaporthe oryzae colony growth and rice blast severity1.

Figure 3
Suppression of leaf blast severity. A) Leaf blast severity has two groups: Group 1 (BRM65919, BRM65918, BRM65917, BRM65923, BRM65926, BRM65929, BRM63523, BRM65915, BRM65925, BRM65921, BRM63525, BRM65930, BRM65927, BRM65928, BRM65922, BRM63521, BRM65924, BRM63522, BRM32112, BRM65920 and BRM65916); Group 2 (CONTROL). Different letters are statistically diffe1rent (p < 0.05) by the Scott-Knott test. Rice Blast symptoms, sporulating typical lesions on control (B), contrasting with rice leaves with no symptoms (C).

Pseudomonas spp. isolates are efficient biological control agents against plant diseases, probably because they can produce cellulose, siderophores, and phosphatase, in addition to inducing resistance in rice plants (FILIPPI et al., 2011FILIPPI, M. C. C. et al. Leaf blast (Magnaporthe oryzae) suppression and growth promotion by rhizobacteria on aerobic rice in Brazil. Biological Control, 58: 160-166, 2011.; AJULO et al., 2023AJULO, A. A. et al. Screening bacterial isolates for biocontrol of sheath blight in rice plants. Journal of Environmental Science and Health, Part B, 58: 426-435, 2023.), which work together to limit M. oryzae tissue plant colonization. The leaf blast cycle begins when the conidia germinate and form a thin germ tube as the spores adhere to the hydrophobic cuticle of the rice leaf. The germ tube develops into an appressorium, and a small penetration peg forms that pierces the cuticle and allows access to the rice epidermis. Bulbous, invasive hyphae penetrating the rice plasma membrane and entering epidermal cells are responsible for plant tissue invasion and symptom development (BODDY, 2016BODDY, L. Pathogens of Autotrophs. In: WATKINSON, S. C.; BODDY, L.; MONEY, N. P. (Eds.). The Fungi. 3. ed. San Diego, CA: Academic Press (Elsevier), 2016, v. 3, cap. 8, p. 245-292.). As shown in Figure 3, the control plants presented typical sporulative lesions, indicating that M. oryzae conidia germinated and colonized the rice leaves, and plasmodesmata migrated cell-to-cell, covering the rice leaves with typical symptoms. In contrast, plants treated with the isolate BRM32112 (P. nitroreducens) had no lesions, indicating that M. oryzae conidia did not produce symptoms, although we cannot confirm that antagonism only occurs.

Other isolates also presented a very high rice blast suppression, such as 95, 92, and 70% (Figure 2). It is important to highlight the diversity between the results obtained for isolates of the same species (Table 2), which can be observed among isolates of P. megaterium (formerly B. megaterium) (LIU et al., 2023LIU, J.-M. et al. Antimicrobial activity and comparative metabolomic analysis of Priestia megaterium strains derived from potato and dendrobium. Scientific Reports 13: 1-11, 2023.), S. marcescens, Bacillus spp., and Enterobacter spp.

In recent years, many bacterial genera have been studied, including more frequently the genera Bacillus, Stenotrophomonas, Burkholderia, and Pseudomonas (LIU et al., 2023LIU, J.-M. et al. Antimicrobial activity and comparative metabolomic analysis of Priestia megaterium strains derived from potato and dendrobium. Scientific Reports 13: 1-11, 2023.). Bacillus is one of the main genera, and its taxonomy has recently been revisited using comprehensive phylogenomic and comparative genomic approaches. Priestia megaterium is a new genus separate from Bacillus and is considered a potential biological control agent with antimicrobial activities and various control effects on plant diseases. Several mechanisms allow P. megaterium to act as a biopesticide or biocontrol agent. Ajulo et al. (2023)AJULO, A. A. et al. Screening bacterial isolates for biocontrol of sheath blight in rice plants. Journal of Environmental Science and Health, Part B, 58: 426-435, 2023. also demonstrated that P. megaterium could solubilize phosphorus and zinc and produce lytic enzymes, such as lipase, laccase, amylase, protease, siderophores, and the phytohormone IAA, indicating that some of the mechanisms applied by this isolate are efficient antagonists of M oryzae.

Serratia spp. is a rod-shaped bacterium that has been proposed as a plant growth-promoting rhizobacterium due to its phosphate solubilization properties, IAA, siderophores, and biofilm production, besides enzyme activities such as ACC deaminase, cellulase, β-1-3 glucanase, chitinase activity, and antifungal metabolites, such as pyrrolnitrin, carbapenem, prodigiosin, haterumalide, and siderophores (LEVENFORS et al., 2004LEVENFORS, J. J. et al. Broad-spectrum antifungal metabolites produced by the soil bacterium Serratia plymuthica A 153. Soil Biology and Biochemistry, 36: 677-685, 2004.). Compared to synthetic compounds, these natural products offer greater structural diversity and synergism between molecules and are considered exceptional sources of new agrochemicals (TREMACOLDI; SOUZA FILHO, 2006TREMACOLDI, C. R.; SOUZA FILHO, A. P. S. Toxinas Produzidas por Fungos Fitopatógenos: Possibilidades de Uso no Controle de Plantas Daninhas, p. 22, 2006. Disponível em: <http://www.cpatu.embrapa.br>. Acesso em: 20 out. 2023.
http://www.cpatu.embrapa.br...
). These special traits perfectly fit the requirements for the biological control of phytopathogens (ARRIEL-ELIAS et al., 2023ARRIEL-ELIAS, M. T. et al. Molecular networking as a tool to annotate the metabolites of Bacillus sp. and Serratia marcescens isolates and evaluate their fungicidal effects against Magnaporthe oryzae and Bipolaris oryzae. 3 Biotech, 13: 1-11, 2023.). In our study, S. marcescens (BRM63523) stood out in reducing the area of M. oryzae colonies.

Pseudomonas spp. belongs to the family Pseudomonadaceae and comprises 191 described species. Members of this genus exhibit high levels of metabolic diversity, allowing them to colonize a wide range of niches (KOEHORST et al., 2016KOEHORST, J. J. et al. Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data. Scientific Reports, 6: 1-14, 2016.). Numerous studies have focused on the effects of bacteria of the genus Pseudomonas on fungal growth (BAJPAI et al., 2018BAJPAI, A. et al. Production and Characterization of an Antifungal Compound from Pseudomonas protegens Strain W45. Proceedings of the National Academy of Sciences, India Section B: Biological Sciences, 88: 1081-1089, 2018.). When investigating the antifungal activity against major rice pathogens and discovering an isolate capable of inhibiting mycelial growth when isolated and purified, they discovered that 2,4-diacetylfloroglucinol (DAPG) could potentially inhibit M. oryzae growth and suppress rice plant colonization.

Bacillus is another important genus, endospore producers that is highly resistant to adverse environmental conditions (CLAUS; BERKELEY, 1986CLAUS, D.; BERKELEY, R. C. W. The genus Bacillus Cohn, 1872. Bergey’s manual of systematic bacteriology, 2: 1105-1139, 1986.). Bacillus cereus is a spore-forming soil bacterium proven to be an effective biological control agent against plant diseases. However, it is uncommon to have B. thuringiensis as a plant disease suppressor (Figures 1 and 2). B. thuringiensis and its metabolites efficiently reduced the M. oryzae colony area and suppressed the severity of rice blast. The mechanisms applied by B. thuringiensis could limit pathogen growth and tissue colonization or improve plant defense systems (FILIPPI et al., 2011FILIPPI, M. C. C. et al. Leaf blast (Magnaporthe oryzae) suppression and growth promotion by rhizobacteria on aerobic rice in Brazil. Biological Control, 58: 160-166, 2011.; ARRIEL-ELIAS et al., 2023ARRIEL-ELIAS, M. T. et al. Molecular networking as a tool to annotate the metabolites of Bacillus sp. and Serratia marcescens isolates and evaluate their fungicidal effects against Magnaporthe oryzae and Bipolaris oryzae. 3 Biotech, 13: 1-11, 2023.). A good example of Bacillus spp. as a bioagent was described by Zhu et al. (2021)ZHU, L. et al. Complete Genome Sequence of Bacillus badius NBPM-293, a Plant Growth-Promoting Strain Isolated from Rhizosphere Soil. Microbiology Resource Announcements, 10: 1-2, 2021.. The group found that B. velezensis either directly or indirectly defends the plant against rice blast by generating antibiotics against plant pathogenic bacteria and triggering a rice PAMP-triggered immune (PTI) response.

Other studies carried out under controlled conditions demonstrated the potential of the rhizobacteria Burkholderia cepacia (BRM32111) and S. marcescens (BRM32113) in plant growth promotion, resistance induction, leaf blast suppression, dry matter gain, promote positive changes in physiological parameters and induce positives morpho-anatomic in rice roots, increase in root length, root cortex expansion, and increase spaces aerenchyma (FILIPPI et al., 2011FILIPPI, M. C. C. et al. Leaf blast (Magnaporthe oryzae) suppression and growth promotion by rhizobacteria on aerobic rice in Brazil. Biological Control, 58: 160-166, 2011.; PRATHAP; RANJITHA KUMARI, 2017PRATHAP, M.; RANJITHA KUMARI, B. D. Bioformulation in biological control for plant diseases - A Review. International Journal of Biotech Trends and Technology, 22: 1-8, 2017.; SOUZA et al., 2021SOUZA, A. C. A. et al. Silicon rates and beneficial microorganism on blast suppression and productivity of upland rice. Journal of Plant Science and Phytopathology, 5: 20-27, 2021.).

Among the 21 rhizobacterial isolates investigated here, originating from an agroecological agricultural environment, seven were classified as belonging to the genus Serratia, six as Bacillus, three as Priestia, two as Stenotrophomonas, two as Enterobacter, and one as Pseudomonas. These isolates were identified by sequencing amplicons from the 16S rRNA region (AJULO et al., 2023AJULO, A. A. et al. Screening bacterial isolates for biocontrol of sheath blight in rice plants. Journal of Environmental Science and Health, Part B, 58: 426-435, 2023.). The taxonomic classification of prokaryotes has been carried out using techniques that have evolved and become more robust over the years, thus making it possible to adjust interest rates and their components. Expectations are that prokaryotic taxonomy will acquire a more stable status in the genomic era (HELENE; KLEPA; HUNGRIA, 2022HELENE, L. C. F.; KLEPA, M. S.; HUNGRIA, M. New Insights into the Taxonomy of Bacteria in the Genomic Era and a Case Study with Rhizobia. International Journal of Microbiology, 2022: 1-19, 2022.) and thus improve our understanding of microbiota populations and their constituents.

These results provide relevant food and nutritional options. The environmentally friendly control of plant diseases fits perfectly into the ONU 2030 Agenda. It is aligned with the Concept of One Health System, an integrated and unifying approach that aims to sustainably balance, improve, and optimize the health of people, animals, and ecosystems (HOFFMANN et al., 2022HOFFMANN, V. et al. A one health approach to plant health. CABI Agriculture and Bioscience, 3: 1-7, 2022.).

CONCLUSION

Seven isolates, classified as S. marcescens (BRM65918, BRM65923, BRM65926, and BRM63523), B. cereus (BRM65919), Stenotrophomonas nitritireducens (BRM65917), and P. megaterium (BRM65929) reduced radial growth of M. oryzae from 80.26 to 77.33%.

The best leaf blast severity reducers were P. nitroreducens (BRM32112), B. thuringiensis (BRM65928), P. megaterium (BRM65916), S. marcescens (BRM65918), S. nematodiphila (BRM63522), and E. hormaechei (BRM65925), varying from 97 to 95% respectively. BRM65918 presented the best efficiency for both antagonism and disease suppression, breaking the disease cycle throughout the infection process, in which the bacteria operate by direct antagonism with M. oryzae. However, these 14 isolates should be tested separately under field conditions and mixed to determine their synergistic effects on rice disease management.

REFERENCES

  • AJULO, A. A. et al. Screening bacterial isolates for biocontrol of sheath blight in rice plants. Journal of Environmental Science and Health, Part B, 58: 426-435, 2023.
  • ARRIEL-ELIAS, M. T. et al. Molecular networking as a tool to annotate the metabolites of Bacillus sp. and Serratia marcescens isolates and evaluate their fungicidal effects against Magnaporthe oryzae and Bipolaris oryzae 3 Biotech, 13: 1-11, 2023.
  • BAJPAI, A. et al. Production and Characterization of an Antifungal Compound from Pseudomonas protegens Strain W45. Proceedings of the National Academy of Sciences, India Section B: Biological Sciences, 88: 1081-1089, 2018.
  • BEZERRA, G. A. et al. Evidence of Pyricularia oryzae adaptability to tricyclazole. Journal of Environmental Science and Health, Part B, 56: 869-876, 2021.
  • BODDY, L. Pathogens of Autotrophs. In: WATKINSON, S. C.; BODDY, L.; MONEY, N. P. (Eds.). The Fungi 3. ed. San Diego, CA: Academic Press (Elsevier), 2016, v. 3, cap. 8, p. 245-292.
  • CAPRILES, C. H.; MATA, S.; MIDDELVEEN, M. Preservation of fungi in water (Castellani): 20 years. Mycopathologia, 106: 73-79, 1989.
  • CLAESSEN, M. E. C. (ORG.). Manual de métodos de análise de solo 2. ed. 1997. Disponível em: <http://www.infoteca.cnptia.embrapa.br/infoteca/handle/doc/330804>. Acesso em: 15 ago. 2022.
    » http://www.infoteca.cnptia.embrapa.br/infoteca/handle/doc/330804
  • CLAUS, D.; BERKELEY, R. C. W. The genus Bacillus Cohn, 1872. Bergey’s manual of systematic bacteriology, 2: 1105-1139, 1986.
  • ENEBE, M. C.; BABALOLA, O. O. The influence of plant growth-promoting rhizobacteria in plant tolerance to abiotic stress: a survival strategy. Applied Microbiology and Biotechnology, 102: 7821-7835, 20 2018.
  • FILIPPI, M. C. C. et al. Leaf blast (Magnaporthe oryzae) suppression and growth promotion by rhizobacteria on aerobic rice in Brazil. Biological Control, 58: 160-166, 2011.
  • FILIPPI, M. C.; PRABHU, A. S. Phenotypic virulence analysis of Pyricularia grisea isolates from Brazilian upland rice cultivars. Pesquisa Agropecuária Brasileira, 36: 27-35, 2001.
  • HELENE, L. C. F.; KLEPA, M. S.; HUNGRIA, M. New Insights into the Taxonomy of Bacteria in the Genomic Era and a Case Study with Rhizobia. International Journal of Microbiology, 2022: 1-19, 2022.
  • HOFFMANN, V. et al. A one health approach to plant health. CABI Agriculture and Bioscience, 3: 1-7, 2022.
  • KOEHORST, J. J. et al. Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data. Scientific Reports, 6: 1-14, 2016.
  • LEVENFORS, J. J. et al. Broad-spectrum antifungal metabolites produced by the soil bacterium Serratia plymuthica A 153. Soil Biology and Biochemistry, 36: 677-685, 2004.
  • LIU, J.-M. et al. Antimicrobial activity and comparative metabolomic analysis of Priestia megaterium strains derived from potato and dendrobium. Scientific Reports 13: 1-11, 2023.
  • MARTINS, B. E. D. M. et al. Characterization of bacterial isolates for sustainable rice blast control. Revista Caatinga, 33: 702-712, 2020.
  • NOTTEGHEM, J. L. Cooperative experiment on horizontal resistance to rice blast. In: INTERNATIONAL RICE RESEARCH INSTITUTE. (Ed.). Blast and upland rice: report and recommendations from the meeting for international collaboration in upland rice improvement. Los Baños, Filipinas. 1981, p. 43-51.
  • OLIVEIRA, M. I. S., et al. Formulations of Pseudomonas fluorescens and Burkholderia pyrrocinia control rice blast of upland rice cultivated under no-tillage system. Biological control, 144: 1-6, 2020.
  • PRATHAP, M.; RANJITHA KUMARI, B. D. Bioformulation in biological control for plant diseases - A Review. International Journal of Biotech Trends and Technology, 22: 1-8, 2017.
  • R CORE TEAM. R: A Language and Environment for Statistical Computing Vienna, Austria, 2023. Disponível em: <https://www.R-project.org/>. Acesso em: 10 jan. 2023.
    » https://www.R-project.org/
  • RAIS, A. et al. Antagonistic Bacillus spp. reduce blast incidence on rice and increase grain yield under field conditions. Microbiological Research, 208: 54-62, 2018.
  • SOUZA, A. C. A. et al. Enzyme-Induced Defense Response in the Suppression of Rice Leaf Blast (Magnaporthe oryzae) By Silicon Fertilization and Bioagents. International Journal of Research Studies in Biosciences (IJRSB), 3: 22-32, 2015.
  • SOUZA, A. C. A. et al. Silicon rates and beneficial microorganism on blast suppression and productivity of upland rice. Journal of Plant Science and Phytopathology, 5: 20-27, 2021.
  • TREMACOLDI, C. R.; SOUZA FILHO, A. P. S. Toxinas Produzidas por Fungos Fitopatógenos: Possibilidades de Uso no Controle de Plantas Daninhas, p. 22, 2006. Disponível em: <http://www.cpatu.embrapa.br>. Acesso em: 20 out. 2023.
    » http://www.cpatu.embrapa.br
  • WIRASWATI, S. et al. Antifungal activities of bacteria producing bioactive compounds isolated from rice phyllosphere against Pyricularia oryzae Journal of Plant Protection Research, 59: 86-94, 2019.
  • ZHU, L. et al. Complete Genome Sequence of Bacillus badius NBPM-293, a Plant Growth-Promoting Strain Isolated from Rhizosphere Soil. Microbiology Resource Announcements, 10: 1-2, 2021.

Publication Dates

  • Publication in this collection
    15 Mar 2024
  • Date of issue
    2024

History

  • Received
    04 Feb 2023
  • Accepted
    28 Nov 2023
Universidade Federal Rural do Semi-Árido Avenida Francisco Mota, número 572, Bairro Presidente Costa e Silva, Cep: 5962-5900, Telefone: 55 (84) 3317-8297 - Mossoró - RN - Brazil
E-mail: caatinga@ufersa.edu.br