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Karyotypic characterization of Centromochlus schultzi Rössel 1962 (Auchenipteridae, Centromochlinae) from the Xingu River basin: New inferences on chromosomal evolution in Centromochlus

Abstract

Centromochlinae is a widely diverse subfamily with more than 50 species and several taxonomic conflicts due to morphological similarity between Tatia and Centromochlus species. However, cytogenetic studies on this group have been limited to only four species so far. Therefore, here we present the karyotype of Centromochlus schultzi from the Xingu River in Brazil using classic cytogenetic techniques, physical mapping of the 5S and 18S rDNAs, and telomeric sequences (TTAGGG)n. The species had 58 chromosomes, simple NORs and 18S rDNA sites. Heterochromatic regions were detected on the terminal position of most chromosomes, including pericentromeric and centromeric blocks that correspond to interstitial telomeric sites. The 5S rDNA had multiple sites, including a synteny with the 18S rDNA in the pair 24st, which is an ancestral feature for Doradidae, sister group of Auchenipteridae, but appears to be a homoplastic trait in this species. So far, C. schultzi is only the second species within Centromochlus to be karyotyped, but it has already presented characteristics with great potential to assist in future discussions on taxonomic issues in the subfamily Centromochlinae, including the first synteny between rDNAs in Auchenipteridae and also the presence of heterochromatic ITSs that could represent remnants of ancient chromosomal fusions.

Keywords:
rDNA; Synteny; ITS; Tatia

Introduction

The driftwood catfish family, Auchenipteridae, is a monophyletic clade supported by morphological and molecular synapomorphies (Birindelli, 2014Birindelli JLO (2014) Phylogenetic relationships of the South American Doradoidea (Ostariophysi: Siluriformes). Neotrop Ichthyol 12:451-564. ; Calegari et al., 2019Calegari BB, Vari RP and Reis RE (2019) Phylogenetic systematics of the driftwood catfishes (Siluriformes: Auchenipteridae): A combined morphological and molecular analysis. Zool J Linn Soc 187:661-773. ). This family is composed by 25 genera and 128 valid species (Fricke et al., 2023Fricke R, Eschmeyer WN and Fong JD (2023) Catalog of fishes: Species by family/subfamily, California Academy of Sciences, Fricke R, Eschmeyer WN and Fong JD (2023) Catalog of fishes: Species by family/subfamily, California Academy of Sciences, http://researcharchive.calacademy.org/research/ichthyology/catalog/SpeciesByFamily.asp (accessed 25 October 2022).
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) and is currently divided into two subfamilies: Auchenipterinae, comprising 18 genera and 78 species, and Centromochlinae, with 7 genera and 50 species (Fricke et al., 2023Fricke R, Eschmeyer WN and Fong JD (2023) Catalog of fishes: Species by family/subfamily, California Academy of Sciences, Fricke R, Eschmeyer WN and Fong JD (2023) Catalog of fishes: Species by family/subfamily, California Academy of Sciences, http://researcharchive.calacademy.org/research/ichthyology/catalog/SpeciesByFamily.asp (accessed 25 October 2022).
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). Centromochlinae is the most unstable subfamily from the taxonomic point of view, with the diagnostic limits of some genera still fragilely defined, even after several and recent taxonomic revisions (Calegari et al., 2019Calegari BB, Vari RP and Reis RE (2019) Phylogenetic systematics of the driftwood catfishes (Siluriformes: Auchenipteridae): A combined morphological and molecular analysis. Zool J Linn Soc 187:661-773. ; Sarmento-Soares and Martins-Pinheiro, 2020Sarmento-Soares LM and Martins-Pinheiro RF (2020) A reappraisal of phylogenetic relationships among auchenipterid catfishes of the subfamily Centromochlinae and diagnosis of its genera (Teleostei: Siluriformes). Proc Acad Nat Sci Philadelphia 167:85-146. ).

According to Fricke et al. (2023Fricke R, Eschmeyer WN and Fong JD (2023) Catalog of fishes: Species by family/subfamily, California Academy of Sciences, Fricke R, Eschmeyer WN and Fong JD (2023) Catalog of fishes: Species by family/subfamily, California Academy of Sciences, http://researcharchive.calacademy.org/research/ichthyology/catalog/SpeciesByFamily.asp (accessed 25 October 2022).
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), the genus Centromochlus Kner 1858 consists of nine species: Centromochlus heckelii (De Filippi 1853), Centromochlus schultzi Rössel, 1962, Centromochlus existimatus Mees 1974, Centromochlus musaicus (Royero 1992), Centromochlus macracanthus Soares-Porto 2000, Centromochlus carolae (Vari and Ferraris 2013), Centromochlus melanoleucus (Vari and Calegari 2014), Centromochlus orca Sarmento-Soares, Lazzarotto, Py-Daniel and Leitão 2017, and Centromochlus akwe Coelho, Chamon and Sarmento-Soares 2021. However, the Centromochlus species are morphologically similar to other genera of Centromochlinae, which historically resulted in several reallocations, mainly involving Tatia Miranda-Ribeiro 1911. As a result, establishing taxonomic limits for these species remains a major challenge. For instance, Grant (2015Grant S (2015) Four new subgenera of Centromochlus Kner, 1858 with comments on the boundaries of some related genera (Siluriformes: Auchenipteridae: Centromochlinae). Ichthyofile 3:16.) proposed that Centromochlus would consist of four subgenera: Balroglanis, Duringlanis, Sauronglanis and Ferrarissoaresia. Calegari et al. (2019Calegari BB, Vari RP and Reis RE (2019) Phylogenetic systematics of the driftwood catfishes (Siluriformes: Auchenipteridae): A combined morphological and molecular analysis. Zool J Linn Soc 187:661-773. ) elevated Balroglanis, Duringlanis and Ferrarissoaresia to the level of genera and synonymized Sauronglanis with Tatia. Recently, Balroglanis which included B. schultzi, B. macracanthus and B. carolae was synonymized with Centromochlus (Sarmento-Soares and Martins-Pinheiro, 2020Sarmento-Soares LM and Martins-Pinheiro RF (2020) A reappraisal of phylogenetic relationships among auchenipterid catfishes of the subfamily Centromochlinae and diagnosis of its genera (Teleostei: Siluriformes). Proc Acad Nat Sci Philadelphia 167:85-146. ), and only Duringlanis and Ferrarissoaresia remains as valid genera (Fricke et al., 2023Fricke R, Eschmeyer WN and Fong JD (2023) Catalog of fishes: Species by family/subfamily, California Academy of Sciences, Fricke R, Eschmeyer WN and Fong JD (2023) Catalog of fishes: Species by family/subfamily, California Academy of Sciences, http://researcharchive.calacademy.org/research/ichthyology/catalog/SpeciesByFamily.asp (accessed 25 October 2022).
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).

The difficulty in determining external morphological characters for delimiting the taxonomic status of Centromochlus species interferes with the estimate of diversity of the group and the understanding of its phylogenetic relationships. In similar contexts, cytogenetics has proved to be an important tool, contributing to solve taxonomic and phylogenetic problematics (e.g., Bertollo et al., 2000Bertollo LAC, Born GG, Dergam JA, Fennochio AS and Moreira -Filho O (2000) A biodiversity approach in the Neotropical Erythrinidae fish, Hoplias malabaricus. Karyotypic survey, geographic distribution of cytotypes and cytotaxonomic considerations. Chromosome Res 8:603-613. ; Artoni et al., 2015Artoni RF, Castro JP, Jacobina UP, Lima -Filho PA, Costa GWWF and Molina WF (2015) Inferring diversity and evolution in fish by means of integrative molecular cytogenetics. Sci World J 2015:365787. ; Santos et al., 2021Santos DP, Felicetti D, Baumgärtner L, Margarido VP, Blanco DR, Moreira-Filho O and Lui RL (2021) Contributions to the taxonomy of Trachelyopterus (Siluriformes): Comparative cytogenetic analysis in three species of Auchenipteridae. Neotrop Ichthyol 19:e200115. ; Takagui et al., 2021Takagui FH, Viana P, Baumgärtner L, Bitencourt JA, Margarido VP, Lui RL, Feldberg E, Birindelli JLO, Almeida FS and Giuliano-Caetano L (2021) Reconstruction of the Doradinae (Siluriformes-Doradidae) ancestral diploid number and NOR pattern reveals new insights about the karyotypic diversification of the Neotropical thorny catfishes. Gen Mol Biol 44:e20200068. ). However, cytogenetic studies in Auchenipteridae are restricted to 12 species, which are distributed in five genera of Auchenipterinae (Ageneiosus Lacepède 1803, Auchenipterus Bleeker 1862, Entomocorus Eigenmann 1917, Trachelyopterus Cuvier and Valenciennes 1840, and Tympanopleura Eigenmann 1912), and three genera of Centromochlinae (Centromochlus, Tatia and Glanidium Lütken 1874) (Table 1).

Table 1 -
Cytogenetic data in Auchenipteridae. 2n: diploid number; m: metacentric; sm: submetacentric; st: subtelocentric; a: acrocentric; p: short arm; q: long arm; AM: Amazonas state; GO: Goiás state; PR: Paraná state; MT: Mato Grosso state; MS: Mato Grosso do Sul state; MG: Minas Gerais state; RN: Rio Grande do Norte state; Pará state; NI: ITS not investigated; ND: ITS not detected.

Considering this context, this work presents the chromosomal analyses of Centromochlus schultzi from the Xingu River basin. We aimed to discuss evolutionary aspects of the C. schultzi karyotype as well as provide cytotaxonomic markers that may contribute to the discussions about the organization of Centromochlinae.

Material and Methods

Eight specimens (five females and three males) of Centromochlus schultzi were collected in the Xingu River, Altamira region (PA), Brazil (2º53’49’’S; 51º56’09’’W) (Permanent License SISBIO 49379). The specimens were transported to the Instituto Nacional de Pesquisas da Amazônia (INPA), and deposited in the INPA Fish Zoological Collection (INPA/MCTI) (INPA-ICT 059877). The mitotic chromosome suspensions were obtained according to Moreira-Filho and Bertollo (1990Moreira -Filho O and Bertollo LAC (1990) Uma técnica alternativa para preparações cromossômicas de peixes. In: III Simpósio de Citogenética Evolutiva e Aplicada de Peixes Neotropicais: 42, Botucatu, Brazil.) authorized by the Committee on Ethics in Animal Experimentation and Practical Classes of Unioeste (Protocol 09/13 - CEEAAP/Unioeste).

The chromosomes were stained with Giemsa 5% to classify the morphology according to Levan et al. (1964Levan A, Fredga K and Sandberg AA (1964) Nomenclature for centromeric position on chromosomes. Hereditas 52:201-220. ). The constitutive heterochromatin analysis (C-banding) was performed following the protocol described by Sumner (1972Sumner AT (1972) A simple technique for demonstrating centromeric heterochromatin. Exp Cell Res 75:304-306. ), with modifications by Lui et al. (2012Lui RL, Blanco DR, Moreira -Filho O and Margarido VP (2012) Propidium iodide for making heterochromatin more evident in the C-banding technique. Biotech Histochem 87:433-438. ). The detection of the Nucleolus Organizing Regions (AgNORs) was realized according to Howell and Black (1980Howell WM and Black DA (1980) Controlled silver-staining of nucleolus organizer regions with a protective colloidal developer: A 1-step method. Experientia 6:1014-1015. ).

Fluorescent in situ hybridization (FISH) was performed according to Pinkel et al. (1986Pinkel D, Straume T and Gray J (1986) Cytogenetic analysis using quantitative, high-sensitivity, fluorescence hybridization. Proc Natl Acad Sci U S A 83:2934-2938. ) and modifications suggested by Margarido and Moreira-Filho (2008Margarido VP and Moreira -Filho O (2008) Karyotypic differentiation through chromosome fusion and number reduction in Imparfinis hollandi (Ostariophysi, Heptapteridae). Genet Mol Biol 31:235-238. ), with 77% of stringency (200ng of each probe, 50% formamide, 10% sulfate dextran, 2xSSC, pH 7.0 - 7.2, 37 ºC overnight). The (TTAGGG)n probe was amplified by PCR (Ijdo et al., 1991Ijdo JW, Wells RA, Baldini A and Reeders ST (1991) Improved telomere detection using a telomere repeat probe [TTAGGG]n generated by PCR. Nucleic Acids Res 19:4780. ) and labeled with tetramethyl-rodhamine-5-dUTP (Roche). The 18S rDNA probes were obtained through Mini-prep of Prochilodus argenteus Spix and Agassiz, 1829 (Hatanaka and Galetti Jr, 2004Hatanaka T and Galetti Jr PM (2004) Mapping of the 18S and 5S ribosomal RNA genes in the fish Prochilodus argenteus Agassiz, 1829 (Characiformes, Prochilodontidae). Genetica 122:239-244. ), labeled by Bio-Nick Translation Mix (Roche), detected by antibiotin-avidin-FITC and amplified with biotinylated anti-avidin (Roche). The 5S rDNA probes were obtained through Mini-prep of Megaleporinus elongatus Valenciennes, 1850 (Martins and Galetti Jr, 1999Martins C and Galetti Jr PM (1999) Chromosomal localization of 5S rDNA genes in Leporinus fish (Anostomidae, Characiformes). Chromosome Res 7:363-367. ), labeled by Dig-Nick Translation Mix (Roche) and detected by antidigoxigenin-rhodamine (Roche). For the double-FISH with telomeric and 5S rDNA probes, the ribosomal 5S DNA was also labeled by Bio-Nick Translation Mix (Roche), detected with antibiotin-avidin-FITC and amplified with biotinylated anti-avidin.

Results

All chromosomal data described below were the same for both sexes. The diploid number of Centromochlus schultzi was 58 chromosomes, organized as 26 metacentric (m), 16 submetacentric (sm), 8 subtelocentric (st) and 8 acrocentric (a), with a fundamental number (FN) of 108 (Figure 1a ). Pale sites of heterochromatin were observed in the terminal regions of most chromosomes. It was also observed a large pericentromeric block on the short arm of pair 1m, on the centromere of pair 3m and on the short arm of pair 24st, which also presented the secondary constriction (Figure 1a ), and in the short arm of the chromosomes 18sm and 29a (Figure 1b ). The AgNOR was observed on the interstitial region of the short arm of pair 24 (Figure 1a , box), confirmed by mapping of 18S rDNA (Figure 2a ). The 5S rDNA sites were found on the interstitial region of the short arm of pair 4m, terminal region of the short arm of the pairs 27a and 28a, and also in synteny with the 18S rDNA in the short arm of the pair 24sm (Figure 2a, box). FISH with the telomeric probes (TTAGGG)n evidenced sites in the terminal position of all chromosomes, in addition to non-telomeric sites (ITS - Interstitial Telomeric Site) on the short arm of the pair 1m and on the centromere of the pair 3m (Figure 2b ), coinciding with the location of heterochromatic blocks (Figure 1b ). Double FISH with telomeric and 5S rDNA probes confirmed the lack of synteny between the ITS and the ribosomal DNA (Figure S1 Figure S1 - Fluorescent in situ hybridization with 5S rDNA probes (green) and telomeric probes (red). Chromosomal pairs with ITSs are identified by the number in the karyotype. ).

Figure 1 -
Centromochlusschultzi karyotype stained with Giemsa (a) and submitted to C-banding stained with propidium iodide (b). Ag-NORs are presented in box. There were no chromosomal differences between the sexes.

Figure 2 -
(a) Centromochlus schultzi karyotype hybridized with 18S rDNA (green signal on pair 24) and 5S rDNA (red signal on pairs 4, 24, 27 e 28) probes, counterstained with DAPI. (b) Centromochlus schultzi metaphase hybridized with telomeric sequence (TTAGGG)n. The ITSs are indicated on pairs 1 and 3. There were no chromosomal differences between the sexes.

Discussion

The few chromosomal data available for Auchenipteridae species show a diploid number of 58 chromosomes in most species (Table 1). Divergent data have been observed in Ageneiosus and Tympanopleura with 56 chromosomes of the Ageneiosini tribe (Fenocchio and Bertollo, 1992Fenocchio AS and Bertollo LAC (1992) Karyotype, C-bands and NORs of the Neotropical siluriform fish Ageneiosus brevifilis and Ageneiosus atronases (Ageneiosidae). Cytobios 72:19-22.; Lui et al., 2013aLui RL, Blanco DR, Martinez JF, Margarido VP, Venere PC and Moreira -Filho O (2013a) The role of chromosomal fusion in the karyotypic evolution of the genus Ageneiosus (Siluriformes, Auchenipteridae). Neotrop Ichthyol 11:327-334. ). This deviation has been attributed to a chromosomal fusion event, as evidenced by the presence of ITS in Ageneiosus inermis Linnaeus 1766 (Lui et al., 2013aLui RL, Blanco DR, Martinez JF, Margarido VP, Venere PC and Moreira -Filho O (2013a) The role of chromosomal fusion in the karyotypic evolution of the genus Ageneiosus (Siluriformes, Auchenipteridae). Neotrop Ichthyol 11:327-334. ). Another exception is found in C. heckelii, which exhibits a diploid number of 46 chromosomes, the lowest diploid number for Auchenipteridae family (Kowalski et al., 2020Kowalski S, Paiz LM, Silva M, Machado AS, Feldberg E, Traldi JB, Margarido VP and Lui RL (2020) Chromosomal analysis of Centromochlus heckelii (Siluriformes: Auchenipteridae), with a contribution to Centromochlus definition. Neotrop Ichthyol 18:e200009. ). These reductions in the number of chromosomes between members of Ageneiosini and C. heckelii seem to have originated from independent fusion events, as evidenced by the large phylogenetic distance between them (Kowalski et al., 2020Kowalski S, Paiz LM, Silva M, Machado AS, Feldberg E, Traldi JB, Margarido VP and Lui RL (2020) Chromosomal analysis of Centromochlus heckelii (Siluriformes: Auchenipteridae), with a contribution to Centromochlus definition. Neotrop Ichthyol 18:e200009. ). Meyne et al. (1990Meyne J, Baker RJ, Hobart HH, Hsu TC, Ryder OA, Ward OG, Wiley JE, Wurster-Hill DH, Yates TL and Moyzis RK (1990) Distribution of non-telomeric sites of the (TTAGGG)n telomeric sequence in vertebrate chromosomes. Chromosoma 99:3-10. ) presented the first cytogenetic evidence of the presence of ITSs in the karyotypes of different vertebrate species by identifying large blocks of telomeric sequences, preferably located on pericentromeric regions, which have more recently been referred to as heterochromatic ITSs (het-ITSs) (Ruiz-Herrera et al., 2008Ruiz-Herrera A, Nergadze SG, Santagostino M and Giulotto E (2008) Telomeric repeats far from the ends: Mechanisms of origin and role in evolution. Cytogenet Genome Res 122:219-228. ; Bolzán, 2017Bolzán AD (2017) Interstitial telomeric sequences in vertebrate chromosomes: Origin, function, instability and evolution. Mutat Res 773:51-65. ).

ITSs have been described in several fish groups (Ocalewicz, 2013Ocalewicz K (2013) Telomeres in fishes. Cytogenet Genome Res 141:114-125. ; Vicari et al., 2022Vicari MR, Bruschi DP, Cabral-de-Melo DC and Nogaroto V (2022) Telomere organization and the interstitial telomeric sites involvement in insects and vertebrates chromosome evolution. Genet Mol Biol 45:e20220071. ); for the Auchenipteridae family, they have been reported only in A. inermis (Lui et al., 2013aLui RL, Blanco DR, Martinez JF, Margarido VP, Venere PC and Moreira -Filho O (2013a) The role of chromosomal fusion in the karyotypic evolution of the genus Ageneiosus (Siluriformes, Auchenipteridae). Neotrop Ichthyol 11:327-334. ), although there are data of hybridization with telomeric probes in some species of Trachelyopterus and a sample of Glanidium ribeiroi (Table 1). The occurrence of het-ITSs in chromosomes can be explained through a four-step mechanism: [1] fusion without loss of telomeric sequence; [2] amplification and/or degeneration of these sequences; [3] new chromosome rearrangements; [4] breakage or fission on the heterochromatic site (Ruiz-Herrera et al., 2008Ruiz-Herrera A, Nergadze SG, Santagostino M and Giulotto E (2008) Telomeric repeats far from the ends: Mechanisms of origin and role in evolution. Cytogenet Genome Res 122:219-228. ). The ITS detected in C. schultzi indicate a slightly more complex scenario than that observed in A. inermis, which likely only reached the second step, amplification and/or degeneration of these sequences. This is suggested by the fact that C. schultzi maintains the common 2n for the family and the position of the ITS in the chromosomes.

The large centromeric ITS blocks (pairs 1m and 3m) observed in C. schultzi can potentially be explained through two hypotheses: [1] pericentric inversions followed by telomeric sequence amplification (see Rovatsos et al., 2011Rovatsos MT, Marchal JA, Romero-Fernández FJ, Giagia-Athanosopoulou EB and Sánchez A (2011) Rapid, independent, and extensive amplification of telomeric repeats in pericentromeric regions in karyotypes of arvicoline rodents. Chromosome Res 19:869-882. ); and [2] occurrence of fusions and fissions in different chromosomes during the karyotypic evolution followed by amplification events. Both hypotheses may account for the presence of the ITSs as well as the maintenance of the diploid number. Inversion followed by amplification is an old known event in vertebrate species (see Rovatsos et al., 2011Rovatsos MT, Marchal JA, Romero-Fernández FJ, Giagia-Athanosopoulou EB and Sánchez A (2011) Rapid, independent, and extensive amplification of telomeric repeats in pericentromeric regions in karyotypes of arvicoline rodents. Chromosome Res 19:869-882. ), as can be seen in snakes (Viana et al., 2016Viana PF, Ribeiro LB, Souza GM, Chalkidis HM, Gross MC and Feldberg E (2016) Is the karyotype of Neotropical boid snakes really conserved? Cytotaxonomy, chromosomal rearrangements and karyotype organization in the Boidae family. PLoS One 11:e0160274. ) and rodent species (Rovatsos et al., 2011Rovatsos MT, Marchal JA, Romero-Fernández FJ, Giagia-Athanosopoulou EB and Sánchez A (2011) Rapid, independent, and extensive amplification of telomeric repeats in pericentromeric regions in karyotypes of arvicoline rodents. Chromosome Res 19:869-882. ). In the same way, the presence of these sequences as components of centromeric satellite DNA is also reported in several vertebrate groups (Metcalfe et al., 2004Metcalfe CJ, Eldridge MDB and Johnston PG (2004) Mapping the distribution of the telomeric sequence (T2AG3)n in the 2n=14 ancestral marsupial complement and in the macropodines (Marsupialia: Macropodidae) by fluorescence in situ hybridization. Chromosome Res 12:405-414. ; Nanda et al., 2008Nanda I, Fugate M, Steinlein C and Schmid M (2008) Distribution of (TTAGGG)n telomeric sequences in karyotypes of the Xenopus species complex. Cytogenet Genome Res 122:396-400. ; Swier et al., 2012Swier VJ, Khan FAA and Baker RJ (2012) Do time, heterochromatin, NORs, or chromosomal rearrangements correlate with distribution of interstitial telomeric repeats in Sigmodon (cotton rats)? J Hered 103:493-502. ; Bruschi et al., 2014Bruschi DP, Rivera M, Lima AP, Zúñiga AB and Recco-Pimentel SM (2014) Interstitial Telomeric sequences (ITS) and major rDNA mapping reveal insights into the karyotypical evolution of Neotropical leaf frogs species (Phyllomedusa,Hylidae, Anura). Mol Cytogenet 7:22. ; Viana et al., 2016Viana PF, Ribeiro LB, Souza GM, Chalkidis HM, Gross MC and Feldberg E (2016) Is the karyotype of Neotropical boid snakes really conserved? Cytotaxonomy, chromosomal rearrangements and karyotype organization in the Boidae family. PLoS One 11:e0160274. ), which may have gone through later amplification events and originated the ITSs in C. schultzi. We believe that the mechanism of origin by inversion is more probable, as it is parsimonious in allowing the conservation of the diploid number. If this hypothesis represents a real scenario, this would be the first report in Auchenipteridae.

On the other hand, the cytogenetic study in C. heckelii demonstrated 2n=46 chromosomes, showing a large reduction of the diploid number (Kowalski et al., 2020Kowalski S, Paiz LM, Silva M, Machado AS, Feldberg E, Traldi JB, Margarido VP and Lui RL (2020) Chromosomal analysis of Centromochlus heckelii (Siluriformes: Auchenipteridae), with a contribution to Centromochlus definition. Neotrop Ichthyol 18:e200009. ). Alternatively, and less probable, it may indicate that C. schultzi would have undergone chromosomal fissions and fusions along its evolutionary history, leading to the formation of ITS that would be sequentially amplified, maintaining the diploid number. This hypothesis considers the proposal of 2n=58 as a plesiomorphic state in Auchenipteridae, or at least in part of the family lineages, as has been deeply investigated and discussed in Doradidae (see Takagui et al., 2021Takagui FH, Viana P, Baumgärtner L, Bitencourt JA, Margarido VP, Lui RL, Feldberg E, Birindelli JLO, Almeida FS and Giuliano-Caetano L (2021) Reconstruction of the Doradinae (Siluriformes-Doradidae) ancestral diploid number and NOR pattern reveals new insights about the karyotypic diversification of the Neotropical thorny catfishes. Gen Mol Biol 44:e20200068. ).

In Siluriformes, the presence of ITSs as well as diploid number variation is not a rare event. Fusions have been described in species of some genera, such as Ageneiosus (Lui et al., 2013aLui RL, Blanco DR, Martinez JF, Margarido VP, Venere PC and Moreira -Filho O (2013a) The role of chromosomal fusion in the karyotypic evolution of the genus Ageneiosus (Siluriformes, Auchenipteridae). Neotrop Ichthyol 11:327-334. ), Bunocephalus (Ferreira et al., 2016Ferreira M, Garcia C, Matoso DA, Jesus IS and Feldberg E (2016) A new multiple sex chromosome system X1X1X2X2/X1Y1X2Y2 in Siluriformes: Cytogenetic characterization of Bunocephalus coracoideus (Aspredinidae). Genetica 144:591-599. ), Trachydoras (Baumgärtner et al., 2016Baumgärtner L, Paiz LM, Margarido VP and Portela-Castro ALB (2016) Cytogenetics of the thorny catfish Trachydoras paraguayensis (Eigenmann and Ward, 1907), (Siluriformes, Doradidae): Evidence of pericentric inversions and chromosomal fusion. Cytogenet Genome Res 149:201-206. ), Harttia (Blanco et al., 2013Blanco DR, Vicari MR, Lui RL, Bertollo LAC, Traldi JB and Moreira-Filho O (2013) The role of the Robertsonian rearrangements in the origin of the XX/XY1Y2 sex chromosome system and in the chromosomal differentiation in Harttia species (Siluriformes, Loricariidae). Rev Fish Biol Fisheries 23:127-134. , 2017Blanco DR, Vicari MR, Lui RL, Traldi JB, Bueno V, Martinez JF, Brandão H, Oyakawa OT and Moreira -Filho O (2017) Karyotype diversity and evolutionary trends in armored catfish species of the genus Harttia (Siluriformes: Loricariidae). Zebrafish 14:169-176. ; Deon et al., 2020Deon GA, Glugoski L, Vicari MR, Nogaroto V, Sassi FMC, Cioffi MB, Liehr T, Bertollo LAC and Moreira -Filho O (2020) Highly rearranged karyotyped and multiple sex chromosome systems in armored catfishes from the genus Harttia (Teleostei, Siluriformes). Genes 11:1366. ) and Hemiodontichthys (Carvalho et al., 2018Carvalho ML, Silva GJC, Melo S, Ashikaga FY, Shimabukuro-Dias CK, Scacchetti PC, Devidé R, Foresti F and Oliveira C (2018) The non-monotypic status of the Neotropical fish genus Hemiodontichthys (Siluriformes, Loricarridae) evidenced by genetic approaches. Mitochondrial DNA A DNA Mapp Seq Anal 29:1224-1230. ). Centric fissions were described in Rineloricaria (Rosa et al., 2012Rosa KO, Ziemniczak K, de Barros AV, Nogaroto V, Almeida MC, Cestari MM, Artoni RF and Vicari MR (2012) Numeric and structural chromosome polymorphism in Rineloricaria lima (Silutiformes: Loricaridae): Fusion points carrying 5S rDNA or telomere sequence vestiges. Rev Fish Biol Fisher 22:739-749. ), Hypostomus (Traldi et al., 2013Traldi JB, Blanco DR, Vicari MR, Martinez JF, Lui LR, Barros AV, Artoni RF and Moreira -Filho O (2013) Chromosomal diversity in Hypostomus (Siluriformes, Loricariidae) with emphasis on physical mapping of 18S and 5S rDNA sites. Genet Mol Res 12:463-471. ) and some Harttia species (Deon et al., 2020Deon GA, Glugoski L, Vicari MR, Nogaroto V, Sassi FMC, Cioffi MB, Liehr T, Bertollo LAC and Moreira -Filho O (2020) Highly rearranged karyotyped and multiple sex chromosome systems in armored catfishes from the genus Harttia (Teleostei, Siluriformes). Genes 11:1366. ), leading to a probable increase of the diploid number. In Auchenipteridae, the mechanisms of these genetic reorganizations, specifically those we have found in C. schultzi still require further analysis.

The common distribution pattern of heterochromatin in Auchenipteridae is terminal pale blocks in most chromosomes (e.g., Lui et al., 2013aLui RL, Blanco DR, Martinez JF, Margarido VP, Venere PC and Moreira -Filho O (2013a) The role of chromosomal fusion in the karyotypic evolution of the genus Ageneiosus (Siluriformes, Auchenipteridae). Neotrop Ichthyol 11:327-334. ,bLui RL, Blanco DR, Margarido VP, Troy WP and Moreira -Filho O (2013b) Comparative chromosomal analysis concerning two species of genus Tatia (Siluriformes, Auchenipteridae). Comp Cytogenet 7:63-71. ; Machado et al., 2021Machado AS, Kowalski S, Paiz LM, Margarido VP, Blanco DR, Venere PC, Mariotto S, Centofante L, Moreira -Filho O and Lui RL (2021) Comparative cytogenetic analysis between species of Auchenipterus and Entomocorus (Siluriformes, Auchenipteridae). Caryologia 74:89-101. ; Santos et al., 2021Santos DP, Felicetti D, Baumgärtner L, Margarido VP, Blanco DR, Moreira-Filho O and Lui RL (2021) Contributions to the taxonomy of Trachelyopterus (Siluriformes): Comparative cytogenetic analysis in three species of Auchenipteridae. Neotrop Ichthyol 19:e200115. ). Centromochlus schultzi exhibited few chromosomal pairs with heterochromatic blocks and the coincidence with the NORs (Figure 1b ) and ITSs (pairs 1m and 3m) sites are worthy of note. In Centromochlinae, stronger heterochromatic markings can be observed on the W chromosome of C. heckelii (Kowalski et al., 2020Kowalski S, Paiz LM, Silva M, Machado AS, Feldberg E, Traldi JB, Margarido VP and Lui RL (2020) Chromosomal analysis of Centromochlus heckelii (Siluriformes: Auchenipteridae), with a contribution to Centromochlus definition. Neotrop Ichthyol 18:e200009. ) and in the submetacentric pair 15 of T. neivai (Lui et al., 2013bLui RL, Blanco DR, Margarido VP, Troy WP and Moreira -Filho O (2013b) Comparative chromosomal analysis concerning two species of genus Tatia (Siluriformes, Auchenipteridae). Comp Cytogenet 7:63-71. ). In Auchenipterinae species, pericentromeric markings were observed only in some chromosomes (Machado et al., 2021Machado AS, Kowalski S, Paiz LM, Margarido VP, Blanco DR, Venere PC, Mariotto S, Centofante L, Moreira -Filho O and Lui RL (2021) Comparative cytogenetic analysis between species of Auchenipterus and Entomocorus (Siluriformes, Auchenipteridae). Caryologia 74:89-101. ).

Simple NORs are a common feature among Auchenipteridae species, with variation in position (terminal or interstitial) and morphology of the chromosomal pair. Centromochlus heckelii is the only species of the family with multiple NORs (Kowalski et al., 2020Kowalski S, Paiz LM, Silva M, Machado AS, Feldberg E, Traldi JB, Margarido VP and Lui RL (2020) Chromosomal analysis of Centromochlus heckelii (Siluriformes: Auchenipteridae), with a contribution to Centromochlus definition. Neotrop Ichthyol 18:e200009. ). If we consider the morphology of the chromosomal pair bearing the NORs and the position of the site in comparison with the currently studied Centromochlus and Tatia species, it is possible to highlight the following aspect: in both Tatia species (T. jaracatia and T. neivai) and in C. schultzi the NORs are in subtelocentric pairs, while in C. heckelii the NORs are in an acrocentric pair and also in the sex chromosome pair (Table 1, Figure 3). This data demonstrates a greater similarity for this marker between the Tatia species and C. schultzi than between congener species in Centromochlus. In Doradidae, the simple NOR is probably the ancestral feature for most clades, wherein Platydoras hancockii Valenciennes 1840 is the only species in the family to present multiple NORs (Takagui et al., 2021Takagui FH, Viana P, Baumgärtner L, Bitencourt JA, Margarido VP, Lui RL, Feldberg E, Birindelli JLO, Almeida FS and Giuliano-Caetano L (2021) Reconstruction of the Doradinae (Siluriformes-Doradidae) ancestral diploid number and NOR pattern reveals new insights about the karyotypic diversification of the Neotropical thorny catfishes. Gen Mol Biol 44:e20200068. ).

Figure 3
Idiograms representing the karyotypes and locations of heterochromatin, Ag-NORs, 5S rDNA, 18S rDNA, and ITSs in C. schultzi compared to C. heckelii (Kowalski et al., 2020Kowalski S, Paiz LM, Silva M, Machado AS, Feldberg E, Traldi JB, Margarido VP and Lui RL (2020) Chromosomal analysis of Centromochlus heckelii (Siluriformes: Auchenipteridae), with a contribution to Centromochlus definition. Neotrop Ichthyol 18:e200009. ), T. neivai and T. jaracatia (Lui et al., 2013bLui RL, Blanco DR, Margarido VP, Troy WP and Moreira -Filho O (2013b) Comparative chromosomal analysis concerning two species of genus Tatia (Siluriformes, Auchenipteridae). Comp Cytogenet 7:63-71. ).

The ribosomal DNA mapping in Auchenipteridae is limited to a few species (Table 1). Despite the 18S rDNA sites being conserved in relation to the number of carrier pairs, the 5S rDNA is more variable among the studied species of Auchenipteridae. Centromochlus schultzi presented the 5S rDNA sites in four chromosomal pairs, in which, the site in pair 3m may be considered a homeologue to the pairs 4m of both Tatia species (as reported in Lui et al., 2013bLui RL, Blanco DR, Margarido VP, Troy WP and Moreira -Filho O (2013b) Comparative chromosomal analysis concerning two species of genus Tatia (Siluriformes, Auchenipteridae). Comp Cytogenet 7:63-71. ) based on the similarities in morphology and location of the sites, as well as the phylogenetic proximity within the Auchenipteridae family. Although there is similarity in the rDNA distribution in the C. schultzi karyotype in comparison to the Tatia species, C. schultzi exhibits 18S/5S rDNAs synteny detected in pair 24st. Therefore, since the 5S rDNA is the most variable chromosomal marker within this fish group (Table 1), it consequently holds significant potential to elucidate the mechanisms involved in the chromosomal evolution of Centromochlinae.

In fish, the standard arrangement of ribosomal sites is usually in distinct chromosomes (Martins and Galetti Jr, 2001Martins C and Galetti Jr PM (2001) Organization of 5S rDNA in species of the fish Leporinus: Two different genomic locations are characterized by distinct nontranscribed spacers. Genome 44:903-910. ; Gornung, 2013Gornung E (2013) Twenty years of physical mapping of major ribosomal RNA genes across the teleosts: A review of research. Cytogenet Genome Res 141:90-102. ). Studies suggest that since these genes are transcribed by different polymerases and the processes occur in distinct nuclear territories (Amarasinghe and Carlson, 1998Amarasinghe V and Carlson JE (1998) Physical mapping and characterization of 5S rRNA genes in Douglas-fir. J Hered 89:495-500. ), the location of ribosomal genes in different chromosomes and positions would be a way to limit the occurrence of adverse rearrangements (Dover, 1986Dover GA (1986). Molecular drive in multigene families: How biological novelties arise, spread and are assimilated? Trends Genet 2:159-165. ; Martins and Galetti Jr, 1999Martins C and Galetti Jr PM (1999) Chromosomal localization of 5S rDNA genes in Leporinus fish (Anostomidae, Characiformes). Chromosome Res 7:363-367. , 2000Martins C and Galetti Jr PM (2000) Conservative distribution of 5S rDNA loci in Schizodon (Pisces, Anostomidae) chromosomes. Chromosome Res 8:353-355. ; Martins and Wasko, 2004Martins C and Wasko A (2004) Organization and evolution of 5S ribosomal DNA in the fish genome. In: Williams CR (ed) Focus on Genome Research. Nova Science Publishers, New York, pp 335-363.; Diniz et al., 2009Diniz D, Laudicina A and Bertollo LAC (2009) Chromosomal location of 18S and 5S rDNA sites in Triportheus fish species (Characiformes, Characidae). Genet Mol Biol 32:37-41. ). However, several groups of Neotropical fish carry these ribosomal genes in synteny, distant or colocalized. Several recent studies in Siluriformes showed the synteny of these genes (e.g., Baumgärtner et al., 2018Baumgärtner L, Paiz LM, Takagui FH, Lui RL, Moreira -Filho O, Giuliano-Caetano L, Portela-Castro ALB and Margarido VP (2018) Comparative cytogenetics analysis on five genera of thorny catfish (Siluriformes, Doradidae): Chromosome review in the family and inferences about chromosomal evolution integrated with phylogenetic proposals. Zebrafish 15:270-278. ; Fonseca et al., 2018Fonseca IC, Maciel LAM, Ribeiro FRV and Rodrigues LRR (2018) Karyotypic variation in the long-whiskered catfish Pimelodus blochii Valenciennes, 1840 (Siluriformes, Pimelodidae) from the lower Tapajós, Amazonas and Trombetas rivers. Comp Cytogen 12:285-298. ; Lorscheider et al., 2018Lorscheider CA, Oliveira JIN, Dulz TA, Nogaroto V, Martins-Santos IC and Vicari MR (2018) Comparative cytogenetics among three sympatric Hypostomus species (Siluriformes: Loricariidae): An evolutionary analysis in a high endemic region. Braz Arch Biol Technol 61:e18180417. ; Takagui et al., 2019Takagui FH, Baumgärtner L, Baldissera JN, Lui RL, Margarido VP, Fonteles SBA, Garcia C, Birindelli JO, Moreira-Filho O, Almeida FS et al. (2019) Chromosomal diversity of thorny catfishes (Siluriformes-Doradidae): A case of allopatric speciation among Wertheimerinae species of São Francisco and Brazilian eastern coastal drainages. Zebrafish 16:477-485. ; Terra et al., 2019Terra MC, Takagui FH, Baldissera JNC, Feldberg E and Dias AL (2019) The karyotypic diversification of Calophysines and the Exallodontus-Propimelodus clade (Pimelodidae, Siluriformes): A cytotaxonomic and evolutionary approach in Pimelodidae based on ancestral state reconstruction. Zebrafish 16:527-541. ), being considered as a plesiomorphic feature in Tricomycteridae and Loricariidae (Ziemniczak et al., 2012Ziemniczak K, Barros AV, Rosa O, Nogaroto V, Almeida MC, Cestari MM, Moreira-Filho O, Artoni RF and Vicari MR (2012) Comparative cytogenetics of Loricariidae (Actinopterygii: Siluriformes): Emphasis in Neoplecostominae and Hypoptopomatinae. Ital J Zool 79:492-501. ), and an ancestral condition in the sister group of Auchenipteridae, the Doradidae family (Baumgärtner et al., 2018Baumgärtner L, Paiz LM, Takagui FH, Lui RL, Moreira -Filho O, Giuliano-Caetano L, Portela-Castro ALB and Margarido VP (2018) Comparative cytogenetics analysis on five genera of thorny catfish (Siluriformes, Doradidae): Chromosome review in the family and inferences about chromosomal evolution integrated with phylogenetic proposals. Zebrafish 15:270-278. ; Takagui et al., 2019Takagui FH, Baumgärtner L, Baldissera JN, Lui RL, Margarido VP, Fonteles SBA, Garcia C, Birindelli JO, Moreira-Filho O, Almeida FS et al. (2019) Chromosomal diversity of thorny catfishes (Siluriformes-Doradidae): A case of allopatric speciation among Wertheimerinae species of São Francisco and Brazilian eastern coastal drainages. Zebrafish 16:477-485. ).

Considering this recent proposal made for Doradidae (Takagui et al., 2019Takagui FH, Baumgärtner L, Baldissera JN, Lui RL, Margarido VP, Fonteles SBA, Garcia C, Birindelli JO, Moreira-Filho O, Almeida FS et al. (2019) Chromosomal diversity of thorny catfishes (Siluriformes-Doradidae): A case of allopatric speciation among Wertheimerinae species of São Francisco and Brazilian eastern coastal drainages. Zebrafish 16:477-485. ), two hypotheses can be made regarding the evolution of this character in the Doradoidea superfamily: (1) the 18S/5S rDNA synteny, detected for the first time in Auchenipteridae in C. schultzi, comprises a plesiomorphic state congruent to the proposal of synteny is ancestral in Doradidae; or (2) this synteny in C. schultzi should only be interpreted as an apomorphy of the species or a synapomorphy of some Centromochlinae species. We believe that the second hypothesis is more parsimonious and that the study of additional taxa is required to clarify this issue properly.

Considering the proposal by Sarmento-Soares and Martins-Pinheiro (2020Sarmento-Soares LM and Martins-Pinheiro RF (2020) A reappraisal of phylogenetic relationships among auchenipterid catfishes of the subfamily Centromochlinae and diagnosis of its genera (Teleostei: Siluriformes). Proc Acad Nat Sci Philadelphia 167:85-146. ) for Centromochlinae, both Centromochlus species that have been studied cytogenetically exhibit signs of Robertsonian rearrangements, as indicated by the presence of ITS in C. schultzi and the lowest diploid number in C. heckelii; whilst Tatia species do not present any signs that Robertsonian rearrangements may have played a role during the group’s diversification. However, it is important to note that the possibility of this characteristic being exclusive to C. heckelii cannot be ruled out. It is noteworthy that the only Glanidium species studied so far had the telomeric sequence mapping performed and no ITS was detected (Lui et al., 2015Lui RL, Blanco DR, Traldi JB, Margarido VP and Moreira -Filho O (2015) Karyotypic variation of Glanidium ribeiroi Haseman, 1911 (Siluriformes, Auchenipteridae) along the Iguaçu River basin. Braz J Biol 75:215-221. ). Another aspect that differs Centromochlus and Tatia considering the current data is the absence of acrocentric chromosomes in the clade formed by T. jaracatia and T. neivai, which are observed in both Centromochlus species, with C. heckelii presenting a larger number of acrocentric chromosomes despite having a smaller diploid number. The 5S/18S rDNA synteny in C. schultzi may be another interesting character in this scenario, since this arrangement has not been visualized in the Tatia species. It is also worth mentioning that the data related to these genes have not yet been generated for C. heckelii (Figure 3). However, the distribution pattern of NORs in C. schultzi is more similar to Tatia species, since C. heckelii presents NORs in an acrocentric pair and on the Z and W chromosomes (multiple sites), while both Tatia species (T. jaracatia and T. neivai) and C. schultzi present NORs in only one subtelocentric pair. Although the Z is also a subtelocentric chromosome, it can be clearly distinguished from the NOR-bearing chromosomes of Tatia species and C. schultzi based on the C-positive heterochromatin blocks (Table 1, Figure 3). These characters need further investigation and will only be better understood with more Centromochlinae taxa being studied.

The cytogenetic data presented here, compared to the limited available data for Centromochlinae, demonstrate an intriguing level of chromosomal variability among Centromochlus and Tatia species (Figure 3), even when compared to the data available for other genera and species within the family Auchenipteridae. Furthermore, by analyzing a single taxon, unprecedented chromosomal information was generated for Centromochlinae, which when compared to previously published data, makes cytogenetic analyzes even more valuable and promising for uncovering the evolutionary complexities within Centromochlinae. Therefore, it represents a potential tool to support the taxonomy and the allocation of species among the genera of Centromochlinae.

Acknowledgements

The authors are grateful to Instituto Chico Mendes de Conservação da Biodiversidade (ICMBio) for the authorization (Permit 49379) and INPA for the logistic support and availability of laboratory technicians for specimen collection. We also thank Universidade Estadual de Londrina (UEL) and Universidade Estadual do Oeste do Paraná (UNIOESTE) for providing the laboratory structure. This study was funded by Fundação Araucária de Apoio ao Desenvolvimento Científico e Tecnológico do Paraná, Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) and Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES).

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Internet Resources

Edited by

Associate Editor:

Maria José de Jesus Silva

Publication Dates

  • Publication in this collection
    25 Mar 2024
  • Date of issue
    2024

History

  • Received
    13 Apr 2023
  • Accepted
    20 Aug 2023
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