Creer et al. 2010CREER, S., FONSECA, V.G., PORAZINSKA, D.L., GIBLIN-DAVIS, R.M., SUNG, W., POWER, D.M., PACKER, M., CARVALHO, G.R., BLAXTER, M.L., LAMBSHEAD, P.J.D. & THOMAS, W.K. 2010. Ultrasequencing of the meiofaunal biosphere: Practice, pitfalls and promises. Mol. Ecol. 19(SUPPL. 1):4-20.
|
Soil |
18S |
not specified |
Protozoa not specified |
Bates et al. 2013BATES, S.T., CLEMENTE, J.C., FLORES, G.E., WALTERS, W.A., PARFREY, L.W., KNIGHT, R. & FIERER, N. 2013. Global biogeography of highly diverse protistan communities in soil. ISME J. 7(3):652-659.
|
Soil |
18S |
not specified |
Alveoata; Archaeplastida; Rhizaria; Stramenopiles |
Filker et al. 2016FILKER, S., SOMMARUGA, R., VILA, I. & STOECK, T. 2016. Microbial eukaryote plankton communities of high-mountain lakes from three continents exhibit strong biogeographic patterns. Mol. Ecol. 25(10):2286-2301.
|
Lakes |
18S |
V4 |
Alveolata; Archaeplastida; Cryptophyta; Heterokonta; Stramenopiles |
Filker et al. 2017FILKER, S., FORSTER, D., WEINISCH, L., MORA‐RUIZ, M., GONZÁLEZ, B., FARÍAS, M.E., ROSSELLÓ‐MÓRA, R. & STOECK, T. 2017. Transition boundaries for protistan species turnover in hypersaline waters of different biogeographic regions. Environ. Microbiol. 19(8):3186-3200.
|
Lakes |
18S |
V4 |
Archaeplastida; Amoebozoa; Apusozoa; Centroheliozoa; Cryptophyta; Excavata; Hacrobia; Haptophyta; Heterokonta; Opisthonka; Rhizaria; Stramenopiles; Telonemia |
Mahé et al. 2017MAHÉ, F. et al. 2017. Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests. Nat. Ecol. Evol. 1(4):1-8.
|
Soil |
18S |
V4 |
Alveolata; Amoebozoa; Apusomonadidae; Archaeplastida; Centroheliozoa; Discoba; Hilomonadae; Opisthokonta; Perkinsea; Rizharia; Stramenopiles |
Simão et al. 2017SIMÃO, T.L.L., BORGES, A.G., GANO, K.A., DAVIS-RICHARDSON, A.G., BROWN, C.T., FAGEN, J.R., TRIPLETT, E.W., DIAS, R., MONDIN, C.A., DA SILVA, R.M., EIZIRIK, E. & UTZ, L.R.P. 2017. Characterization of ciliate diversity in bromeliad tank waters from the Brazilian Atlantic Forest. Eur. J. Protistol. 61359-365.
|
Bromeliads |
18S |
V9 |
Alveolata; Archaeplastida; Discoba; Rhizaria; Stramenopiles |
deAraujo et al. 2018DE ARAUJO, A.S.F., MENDES, L.W., LEMOS, L.N., ANTUNES, J.E.L., BESERRA, J.E.A., DE LYRA, M. do C.C.P., FIGUEIREDO, M. do V.B., LOPES, Â.C. de A., GOMES, R.L.F., BEZERRA, W.M., MELO, V.M.M., DE ARAUJO, F.F. & GEISEN, S. 2018. Protist species richness and soil microbiome complexity increase towards climax vegetation in the Brazilian Cerrado. Commun. Biol. 1(1):135.
|
Soil |
18S |
V9 |
Alveolata; Amoebozoa; Archaeplastida; Excavata; Opisthokonta; Rhizaria; Stramenopiles |
Lentendu et al. 2018aLENTENDU, G., BUOSI, P.R.B., CABRAL, A.F., TREVIZAN SEGÓVIA, B., RAMOS MEIRA, B., LANSAC-TÔHA, F.M., VELHO, L.F.M., RITTER, C.D. & DUNTHORN, M. 2018. Protist Biodiversity and Biogeography in Lakes From Four Brazilian River-Floodplain Systems. J. Eukaryot. Microbiol.
|
Soil |
18S |
V4 |
Apicomplexa, Rhizaria |
Lentendu et al. 2018bLENTENDU, G. , MAHÉ, F., BASS, D., RUECKERT, S., STOECK, T. & DUNTHORN, M. 2018. Consistent patterns of high alpha and low beta diversity in tropical parasitic and free-living protists. Mol. Ecol. 27(13):2846-2857.
|
Rivers |
18S |
V3 |
Alveolata; Archaeplastida; Centroheliozoa; Discoba; Opisthokonta; Perkinsea; Rizharia; Stramenopiles |
Ritter et al. 2018RITTER, C.D., ZIZKA, A., ROGER, F., TUOMISTO, H., BARNES, C., NILSSON, R.H. & ANTONELLI, A. 2018. High-throughput metabarcoding reveals the effect of physicochemical soil properties on soil and litter biodiversity and community turnover across Amazonia. PeerJ 2018(9):e5661.
|
Soil and Litter |
18S |
V7 |
Alveolata; Amoebozoa; Archaeplastida; Rhizaria; Stramenopiles |
Ritter et al. 2019aRITTER, C.D., HÄGGQVIST, S., KARLSSON, D., SÄÄKSJÄRVI, I.E., MUASYA, A.M., NILSSON, R.H. & ANTONELLI, A. 2019. Biodiversity assessments in the 21st century: The potential of insect traps to complement environmental samples for estimating eukaryotic and prokaryotic diversity using high-throughput DNA metabarcoding. Genome 62(3):.
|
Soil and Litter |
18S |
V7 |
Alveolata; Amoebozoa; Archaeplastida; Rhizaria; Stramenopiles |
Ritter et al. 2019bRITTER, C.D., FAURBY, S., BENNETT, D.J., NAKA, L.N., TERSTEEGE, H., ZIZKA, A., HAENEL, Q., NILSSON, R.H. & ANTONELLI, A. 2019. The pitfalls of biodiversity proxies: Differences in richness patterns of birds, trees and understudied diversity across Amazonia. Sci. Rep. 9(1):1-13.
|
Soil, Litter and Insects |
18S |
V7 |
Alveolata; Amoebozoa; Archaeplastida; Rhizaria; Stramenopiles |
Zinger et al. 2019ZINGER, L. et al. 2019. Body size determines soil community assembly in a tropical forest. Mol. Ecol. 28(3):528-543.
|
Soil |
18S |
V7 |
Protozoa not specified |
Fernandes et al. 2021FERNANDES, N.M., CAMPELLO-NUNES, P.H., PAIVA, T.S., SOARES, C.A.G. & SILVA-NETO, I.D. 2021. Ciliate Diversity From Aquatic Environments in the Brazilian Atlantic Forest as Revealed by High-Throughput DNA Sequencing. Microb. Ecol. 81(3):630-643.
|
freshwater and brackish |
18S |
V4 |
Alveolata (Ciliophora) |
Ritter et al. 2021RITTER, C.D., FORSTER, D., AZEVEDO, J.A.R., ANTONELLI, A., NILSSON, R.H., TRUJILLO, M.E. & DUNTHORN, M. 2021. Assessing Biotic and Abiotic Interactions of Microorganisms in Amazonia through Co-Occurrence Networks and DNA Metabarcoding. Microb. Ecol. 1-15.
|
Soil and Litter |
18S |
V7 |
Alveolata; Amoebozoa; Archaeplastida; Rhizaria; Stramenopiles |