Prevalence of deltaF508, G551D, G542X, and R553X mutations among cystic fibrosis patients in the North of Brazil

Abstract

Cystic fibrosis (CF) is the most common genetic disease among Caucasians and is rare among sub-Saharan Africans. The Brazilian population is not ethnically homogeneous but it is the result of three-way ethnic admixture of Europeans, Africans and Amerindians in varying proportions, depending on the region. In the present study, we investigated 33 patients who had been diagnosed and are currently under treatment for CF at the University Hospital João de Barros Barreto, Belém, Pará State. The molecular analysis for G542X, G551D and R553X mutations was performed by PCR followed by RFLP using BstNI, HincII and MboI, respectively, in polyacrylamide gel eletrophoresis and stained with AgNO3. ThedeltaF508 mutation (a deletion of 3 bp) was only analyzed by polyacrylamide gel electrophoresis and stained with AgNO3. Each sample was analyzed for regions of interest in the CFTR gene using amplified by PCR and specific primers. The deltaF508 and G551D mutations presented frequencies of 22.7 and 3%, respectively. In 74.3% of the remaining patients, none of the mutations investigated was found. The present study characterized in a sample of patients with an established clinical diagnosis of CF (asthma, repeated bronchopneumonia, disorders of nutritional status, etc.) the most frequent mutation ( deltaF508) in the North region of Brazil and is also the first report of the G551D mutation. In spite of the wide spectrum of CF mutations and the heterogeneous ethnic origin of the Amazon population, the molecular diagnosis is a helpful additional tool for the diagnosis and treatment of CF patients.

Cystic fibrosis; Gene mutations; Amazon region; Belém; deltaF508 gene; G551D gene

Braz J Med Biol Res, January 2005, Volume 38 (1) 11-15 (Short Communication)

Prevalence of D F508, G551D, G542X, and R553X mutations among cystic fibrosis patients in the North of Brazil

F.G. de Araújo¹, F.C. Novaes¹, N.P.C. dos Santos¹, V.C. Martins², S.M. de Souza², S.E.B. dos Santos¹ and A.K.C. Ribeiro-dos-Santos¹

¹Laboratório de Genética Humana e Médica, Departamento de Patologia, Centro de Ciências Biológicas, Universidade Federal do Pará, Belém, PA, Brasil

²Hospital Universitário João de Barros Barreto, Universidade Federal do Pará, Belém, PA, Brasil

^Text

References

^{Correspondence and Footnotes}

Abstract

Cystic fibrosis (CF) is the most common genetic disease among Caucasians and is rare among sub-Saharan Africans. The Brazilian population is not ethnically homogeneous but it is the result of three-way ethnic admixture of Europeans, Africans and Amerindians in varying proportions, depending on the region. In the present study, we investigated 33 patients who had been diagnosed and are currently under treatment for CF at the University Hospital João de Barros Barreto, Belém, Pará State. The molecular analysis for G542X, G551D and R553X mutations was performed by PCR followed by RFLP using BstNI, HincII and MboI, respectively, in polyacrylamide gel eletrophoresis and stained with AgNO₃. The DF508 mutation (a deletion of 3 bp) was only analyzed by polyacrylamide gel electrophoresis and stained with AgNO₃. Each sample was analyzed for regions of interest in the CFTR gene using amplified by PCR and specific primers. The DF508 and G551D mutations presented frequencies of 22.7 and 3%, respectively. In 74.3% of the remaining patients, none of the mutations investigated was found. The present study characterized in a sample of patients with an established clinical diagnosis of CF (asthma, repeated bronchopneumonia, disorders of nutritional status, etc.) the most frequent mutation ( DF508) in the North region of Brazil and is also the first report of the G551D mutation. In spite of the wide spectrum of CF mutations and the heterogeneous ethnic origin of the Amazon population, the molecular diagnosis is a helpful additional tool for the diagnosis and treatment of CF patients.

Key words: Cystic fibrosis, Gene mutations, Amazon region, Belém, DF508 gene, G551D gene

Cystic fibrosis (CF) is an exocrine disease with an autosomal recessive pattern of inheritance. This genetic disorder is one of the major public health problems and the most common one in the countries of Europe and North America, with frequencies as high as one in every 2,500 births. This disorder is provoked by mutations that affect the gene coding for the CF transmembrane regulation (CFTR) protein, which results in a defective flow of Cl^- and Na⁺ ions, and high concentrations of these ions in sweat (1-4).

DF508 is the most common CF mutation (66%) in the worldwide populations studied to date, although other mutations such as G542X (2.4%), G551D (1.6%), N1303K (1.3%), and W1282X (1.2%) (5-13) may be relatively frequent depending on the ethnic origin of the population.

Brazil, a country of continental dimensions, presents a special situation for studies of CF mutation frequencies. Studies carried out in five States in the South and Southeast regions of Brazil found a mean estimated prevalence for CF of about 1:9,600 births (5). In Rio Grande do Sul State, we observed the highest frequencies, ranging from 1:1,600 births to 1:6,700 births (similar to the majority of European populations). This implies that one in every 20 inhabitants of this state is heterozygous for an altered CF gene, and that mother and father are both heterozygous in one in every 400 child-bearing couples (5).

A study conducted in the Southeastern Brazilian State of Rio de Janeiro (6) found a reduced frequency of DF508 (30.68%) in comparison with worldwide rates and those recorded in other populations from South and Southeast Brazil (Table 1).

Several studies on the prevalence of CF mutations have been reported in Brazil (Table 1). However, most of them were conducted in Southern States, and thus may not provide a reliable countrywide overview of the frequency of CF mutations. In addition, most of these studies focused on mutations that are common in European populations but are usually rare in other ethnic groups. A study conducted by Rabbin-Bortolini et al. (8) about CF in São Paulo State demonstrated the presence of the G542X, N1303K and W1282X mutations, with frequencies of 8.35, 1.6 and 0.8%, respectively. Cabello et al. (7) first reported two patients from the city of Rio de Janeiro carrying the G542X mutation and five other patients carrying splicing mutations 3120+1G®A.

The wide spectrum of CF mutations (more than 900 already described) and the heterogeneous ethnic origin of the Brazilian population are important factors that must be considered to draw a broader map of this disease in the Brazilian territory. Thus, the main objective of the present study was to investigate the four most frequent CF mutations (DF508, G542X, G551D, and R553X) in a sample of patients with an established clinical diagnosis of CF in the North region of Brazil.

The sample analyzed consisted of 33 patients with a clinical diagnosis of CF born in the State of Pará and followed at the University Hospital João de Barros Barreto, Belém, PA, Brazil. The main clinical symptoms were: chronic asthma, repeated bronchopneumonia and destructive airway disease (respiratory symptoms), chronic diarrhea, steatorrhea and meconial ileum (digestive symptoms), and disorders of nutritional status. During this study, the two homozygous patients for the DF508 mutation died of chronic respiratory failure resulting from secondary bacterial infection. The CF diagnosis was performed by a multidisciplinary team from the University Hospital João de Barros Barreto and was based on both abnormally elevated sweat electrolyte concentrations (i.e., two results >60 mEq/l) and typical clinical features related to CF.

The Ethics Committee of the Federal University of Hospital João de Barros Barreto approved this research. Formal consent was obtained from all patients or from persons responsible for them.

Blood samples (10 ml) were collected into tubes containing EDTA and genomic DNA was extracted using the phenol-chloroform method (14). The four mutations (DF508, G542X, G551D, and R553X) were amplified using primers and conditions described below. We used two final PCR volumes (25 and 50 µl) and the amplification was carried out with an MJ Research PTC 100 (Waltham, MA, USA) thermocycler. The volume 25 µl was used to observe the region of 98 bp (exon 10), where we could verify the 3-bp deletion that constitutes the DF508 mutation with 95 bp, amplified specific primers [5'-GTT TTC CTG GAT TAT GCC TGG CAC-3' (forward) and 5'-GTT GGC ATG CTT TGA TGA CGC TTC-3' (reverse)]. The volume 50 µl was used to observe the G542X, G551D and R553X mutations (exon 11). These mutations were amplified using only one pair of primers [5'-CAG AGA AAG ACA ATA TAG TTC C-3' (forward) and 5'-AAA TGC TTG CTA GAC CAA T-3' (reverse)]. A region of 114 bp was amplified and then three mutations were investigated: G542X, G551D and R553X. After the PCR, each mutation was submitted to an RFLP technique using 10 µl of the PCR product for each one of the mutations, added to the specific endonuclease (15,16). In a general way, the normal individuals present the restriction site, represented by the plus signal (+), while the affected individuals do not present the restriction site and are represented by the minus signal (-). Thus, the band pattern observed is: i) normal individuals = two bands (+/+); ii) affected individuals who do not digest and present a single band (-/-), and iii) heterozygote individuals who present a three- band pattern or (+/-). The mutation G542X made use of the endonuclease BstNI. For the individuals who presented the pattern (+/+), which indicates absence of the mutation G542X, the investigation of a second restriction site was made for the endonuclease HincII (G551D). For the individuals who presented the pattern (+/+), or else, absence of the mutation G551D, the investigation of the mutation R553X was also held. At last, for the previous individuals, an investigation for the mutation R553X was made, using endonuclease MboI.

The digestion products were analyzed by polyacrylamide gel electrophoresis and stained with AgNO₃. The DF508 mutation was observed by 7% polyacrylamide gel electrophoresis (Figure 1). The analysis of the G542X, G551D and R553X mutations were observed by 9% polyacrylamide gel electrophoresis.

In the initial sample of 33 patients who presented clinical and laboratory symptoms indicative of CF, we observed only 17 alleles with mutations related to the CF gene. The mean age at genetic diagnosis of CF was 10 years and the mean age at clinical diagnosis was 7.3 years. The birthplaces showed a broad geographic distribution by micro-region in the State of Pará.

Two mutations were detected among the patients, DF508 and G551D, with frequencies of 22.7% (15/66 chromosomes) and 3% (2/66 chromosomes), respectively (Table 1). Fifteen chromosomes presented the DF508 mutation and two individuals were homozygous ( DF508/ DF508), whereas the remaining individuals were heterozygous (Figure 1). In most cases the second allele was not identified ( DF508/?). Only one sample corresponded to the genotype DF508/G551D. The other sample with the G551D mutation was also heterozygous but, once again, it was not possible to identify the second allele.

The DF508 mutation was the most frequent mutation causing CF in the patients studied, in agreement with worldwide reports. However, the frequency of this mutation was lower (22.7%) than the mean frequencies recorded in Europe (66%) or other regions of Brazil. Previous studies have reported frequencies of the DF508 mutation ranging from 25.7% in Rio de Janeiro State (Southeast of Brazil) and 55% in Santa Catarina State (South of Brazil) (see Table 1).

We suggest that the low frequency found in the present study may be related to the distinct process of formation of the Brazilian Amazon population. Santos and Guerreiro (17) investigated 13 classic genetic systems in 5,417 members of 11 admixed Amazonian populations (characterized by the contribution of Caucasian + Amerindian + African) and demonstrated that the contribution of Amerindians (41%) was much greater than the contribution of the African component (12%) and smaller than the Caucasian contribution (47%). This degree of admixture is an important consideration, given that the DF508 mutation emerged originally in Europe 52,000 years ago, thus being considered a genetic marker of European descent (18). It seems likely that the original mean frequency of the DF508 mutation (66%) detected in European populations might have been diluted considerably during the intense ethnic mixing that took place during the formation of the current Amazonian populations. There is also the possibility that other as yet unidentified mutations related to Afro-descendants and Amerindians account for this disease in this region or, alternatively, the sample was small.

Cabello et al. (7) first reported a splicing mutation 3120+1G®A (intron 16) in five Brazilian CF patients from Rio de Janeiro. This mutation was first identified in three Afro-American subjects (12.2%) (19), but was also identified in another population of sub-Saharan Africa (25%) and among Greeks (0.6%). However, in contrast to the estimated admixture for the Amazon region, the genetic proportion of ethnic admixture (Europeans, Africans and Amerindians) in Rio de Janeiro was 40, 52 and 8%, respectively (20). Thus, we observed an inverted pattern regarding the African and Amerindian contribution in the two States.

In conclusion, molecular diagnosis is a helpful additional tool for the diagnosis and treatment of CF patients. Nevertheless, larger numbers of analyses regarding the distribution of different mutations are needed. The CF mutations detected here are consistent with the ethnic heterogeneity of the Brazilian population.

Figure 1.
Analysis of the DF508 mutation in 7% polyacrylamide gel stained with AgNO₃. Individuals 1, 2 and 3 are normal considering the mutation DF508; individuals 4 and 5 are heterozygotes, and individual 6 presents deletion DF508 (affected).

Table 1.
The four most prevalent cystic fibrosis mutations in Brazil.

11. Colonelli GB (1999). Fibrose cística: estudo da mutação DF508 e dos marcadores genéticos XV2C e Km19 em afetados e na população de Belém, PA. Master's thesis, Departamento de Patologia, Centro de Ciências Biológicas, Universidade Federal do Pará, Belém, PA, Brazil.

Address for correspondence: A.K.C. Ribeiro-dos-Santos, Laboratório de Genética Humana e Médica, Departamento de Patologia, Centro de Ciências Biológicas, UFPA, Caixa Postal 8615, 66075-970, Belém, PA, Brasil. Fax: [phone]. E-mail: [e-mail] or [e-mail]

Received October 31, 2003. Accepted October 19, 2004.

• 1. Kerem BS, Rommens JM, Buchanan JA, Markiewicz D, Cox TIC, Chakravati A, Buchwald M & Tsui LC (1989). Identification of the cystic fibrosis gene: genetic analysis. Science, 245: 1073-1080.
• 2. Rommens JM, Iannuzzi MC, Kerem BS et al. (1989). Identification of the cystic fibrosis gene: chromosome walking and jumping. Science, 245: 1059-1065.
• 3. Riordan JR, Rommens JM, Kerem BS et al. (1989). Identification of the cystic fibrosis gene: cloning and characterization of the complementary DNA. Science, 245: 1066-1073.
• 4. Welsh MJ, Ranzey BW, Accurso F & Cutting GR (2001). Cystic fibrosis. In: Scriver CR, Beaudet AL, Valle D & Sly WS (Editors), The Metabolic and Molecular Bases of Inherited Disease 8th edn. McGraw-Hill, New York, 5121-5173.
• 5. Raskin S & Fauez FR (2001). Aspectos genéticos da fibrose cística. In: Carakushansky G (Editor), Doenças Genéticas em Pediatria Guanabara Koogan, São Paulo, SP, Brazil.
• 6. Cabello GM, Moreira AF, Horovitz D, Correia P, Santa Rosa A, Llerena Jr J, Greg J, Grody WW & Degrave WW (1999). Cystic fibrosis: low frequency of the DF508 mutation in 2 population samples from Rio de Janeiro, Brazil. Human Biology, 71: 189-196.
• 7. Cabello GM, Cabello EH, Fernande O & Harris A (2001). The 3120+1G ®A splicing mutation in CFTR is common in Brazilian cystic fibrosis patients. Human Biology, 73: 403-409.
• 8. Rabbin-Bortolini E, Bernardino ALF, Lopes AL, Ferri AS, Passos-Bueno MR & Zatz M (1998). Sweat electrolyte and cystic fibrosis mutation analysis allows early diagnosis in Brazilian children with clinical signs compatible with cystic fibrosis. American Journal of Medical Genetics, 76: 288-290.
• 9. Raskin S, Phillips JA, Kaplan G et al. (1999). Geographic heterogeneity of 4 common worldwide cystic fibrosis non-DF508 mutations in Brazil. Human Biology, 71: 111-121.
• 10. Bernardino AL, Ferri A, Passos-Bueno MR, Kim CE, Nakaie CM, Gomes CE, Damaceno N & Zatz M (2000). Molecular analysis in Brazilian cystic fibrosis patients reveals five novel mutations. Genetic Testing, 4: 69-74.
• 12. Streit C, Burlamaque-Neto AC, Silva FE, Giugliani R & Pereira MLS (2003). CFTR gene: molecular analysis in patients from South Brazil. Molecular Genetics and Metabolism, 78: 259-264.
• 13. Visich A, Zielenski J, Castaños C, Diez G, Grenoville M, Segel E, Barreiro C, Tsui LC & Chertkoff L (2002). Complete screening of the CFTR gene in Argentine cystic fibrosis patients. Clinical Genetics, 61: 207-213.
• 14. Sambrook J, Fritsch EF & Maniatis T (1989). Molecular Cloning: A Laboratory Manual 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, USA.
• 15. Cutting GR, Kash LM, Rosenstein BJ, Tsui LC, Kazazian HH & Antonarakis SE (1990). Two patients with cystic fibrosis, nonsense mutation in each cystic fibrosis gene, and mild pulmonary disease. New England Journal of Medicine, 323: 1685-1689.
• 16. Cutting GR, Kash LM, Rosenstein BJ, Zielenski J, Tsui LC, Antonarakis SE & Kazazian HH (1990). A cluster of cystic fibrosis mutations in the first nucleotide-binding fold of the cystic fibrosis conductance regulator protein. Nature, 346: 366-369.
• 17. Santos S & Guerreiro JF (1995). The indigenous contribution to the formation of the population of the Brazilian Amazon Region. Revista Brasileira de Genética, 18: 311-315.
• 18. Dawson KP & Frossard PM (2000). The geographic distribution of cystic fibrosis mutations gives clues about population origins. European Journal of Pediatrics, 159: 496-499.
• 19. Macek M, Mackova A, Hamosh A et al. (1997). Identification of common cystic fibrosis mutations in African-Americans with cystic fibrosis increases the detection rate to 75%. American Journal of Human Genetics, 60: 1122-1127.
• 20. Lopez-Camelo JS, Cabello PH & Dutra MG (1996). A simple model for the estimation of congenital malformation frequency in racially mixed populations. Brazilian Journal of Genetics, 19: 659-663.

Correspondence and Footnotes

Publication Dates

• Publication in this collection
  10 Feb 2006
• Date of issue
  Jan 2005

History

• Received
  31 Oct 2003
• Accepted
  19 Oct 2004